RnoINT0051536 @ rn6
Intron Retention
Gene
ENSRNOG00000012207 | Dst
Description
dystonin [Source:RGD Symbol;Acc:1306566]
Coordinates
chr9:37959006-37959893:-
Coord C1 exon
chr9:37959567-37959893
Coord A exon
chr9:37959091-37959566
Coord C2 exon
chr9:37959006-37959090
Length
476 bp
Sequences
Splice sites
5' ss Seq
AGGGTACCT
5' ss Score
4.24
3' ss Seq
AATGGAACCTGTGTTTTTAGGCT
3' ss Score
5.55
Exon sequences
Seq C1 exon
GTATTAGAAGATGACATCACCAGTCACAACAAACAGTTACACCAGGCCGTTAGCATCGGCCAGTCCTTAAAGGTCCTGAGCTCCAGGGAGGACAAAGATCTGGTGCAGAGTAAGCTAGACTCCTTGCAAGTGTGGTACTTTGAGATTCAAGAGAAAAGTCACAGCAGGTCTGAGCTCCTCCAGCAGGCCCTGTGCAATGCTAAGATCTTTGGGGAAGATGAAGTTGAGCTGATGAACTGGCTGAACGAAGCACATGGCAAGCTGAGTAAGCTGTCAGTCCAGGATCACAGCACAGAGGCGCTGTGGAGACAGCGGGCCGAACTCAGG
Seq A exon
GTACCTTCATTTATTTCTTTTCTTTCGTTTCTCTCTTTCTTTCTTTCTTTTTTTTTTTTGCTTCATTTTAGTTGTTATTAATTTTATCCATTCTTATCGGTTGCATATTATTTCGTGTCCATTATGATCCATTTGATTTGTTAAACTCACACTAGACCTCTACTTACATGAGCTCGAGTTTATCCAGTTAGCTGGCTCTCTGGCCACTTACTGAGTGTGATCACTCTTCTCTTCATGGACCCCATAAGGAACCAATACCTCCACAAAGGCAGTTTTTATAAGACCCTTGGTGGATTCTAAAAGAGAAGCACAATGAATGCTGGGAGATCTGCGCAGGATATGGGACGTGGGTGGAGCAGGGGAAGAGTGACAGACATTTTAAAAATTAGTGCTTCTGCAGATCTGCCCCCCCCAGTAAACATTCTCTGAGATTAACAAACTCTCCCCCCAACCCCAAATGGAACCTGTGTTTTTAG
Seq C2 exon
GCTCTACAAGAAGACATTCTCCTCAGGAAACAGAGTGTAGATCAGGCACTGCTGAACGGCTTAGAACTGCTCAAACAAACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012207:ENSRNOT00000044452:63
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(57.5=56.0),PF0043516=Spectrin=PU(38.2=35.8)
A:
NA
C2:
PF0043516=Spectrin=FE(27.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCGGCCAGTCCTTAAAGG
R:
AGCAGTTCTAAGCCGTTCAGC
Band lengths:
346-822
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]