BtaINT0053034 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021237 | DST
Description
dystonin [Source:HGNC Symbol;Acc:HGNC:1090]
Coordinates
chr23:3611711-3612396:+
Coord C1 exon
chr23:3611711-3611870
Coord A exon
chr23:3611871-3612069
Coord C2 exon
chr23:3612070-3612396
Length
199 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGG
5' ss Score
6.6
3' ss Seq
CTTTTTTAAACCTCGTTTAGGCG
3' ss Score
6.01
Exon sequences
Seq C1 exon
GAACCGTCAGCTGGAAGGTATCTCCGTGGTAGCACAGCAGTTTCACGAAACCTTAGAGCCGCTGAACGAGTGGCTGTCGACCACAGAGAAGAGGCTGGCGAACTGCGAGCCTGTTGGAACCCAGGCGTCCAAGCTAGAGGAGCAGATTGAGCAGCACAAA
Seq A exon
GTAAGGTTCCCATCACACGCCCGTGGGATCCAGTTGTCCCTTTGCTTTGAGGTTTTATGACACGCATTTGAGTTACGCGCTATTGGGTGACGCCTCAGTTCAACCTTATACCCATTTCATGTGTCATCTTTTTGTTCAATTTATGTTGTCATTTTTATTTGTCCATTCTTTCTGTTTCCCTTTTTTAAACCTCGTTTAG
Seq C2 exon
GCGTTAGAAGATGACATCCTGCATCACAATAAGCATTTACACCAGACTGTTAGCATTGGCCAGTCTTTAAAGGTTTTGAGCTCCAGGGAGGATAAAGATATGGTGCAGAGTAAACTAGACTCCTCCCAAGTGTGGTACATTGAGATTCAAGAGAAAAGCCACAGCAGGTCTGAGCTCCTGCAGCAGGCTCTGTGTAATGCTAAGATTTTTGGGGAAGATGAAGTGGAGCTGATGAACTGGCTGAGTGAAGTGCATGACAAGCTGAGGCGGCTCTCGGTCCAGGACTCCAGCCCCGAGGGGCTGTGGACACAGCAGGCTGAGTTGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021237:ENSBTAT00000061451:62
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.009
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(6.7=11.1),PF0043516=Spectrin=PU(40.6=79.6)
A:
NA
C2:
PF0043516=Spectrin=PD(57.5=56.0),PF0043516=Spectrin=PU(38.2=35.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCAGATTGAGCAGCACAA
R:
AGCTCCACTTCATCTTCCCCA
Band lengths:
252-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]