DreINT0011397 @ danRer10
Intron Retention
Gene
ENSDARG00000101858 | FQ311894.1
Description
NA
Coordinates
chr13:1502887-1506163:+
Coord C1 exon
chr13:1502887-1503046
Coord A exon
chr13:1503047-1505836
Coord C2 exon
chr13:1505837-1506163
Length
2790 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCAG
5' ss Score
3.97
3' ss Seq
TGCGTTTGTGGCTAAATCAGGCT
3' ss Score
3.23
Exon sequences
Seq C1 exon
ACACAAGCAGCTGGAGAATATTTCGGTGGTGGCTCAGCAATTTCACGAGACCCTGGAGCCGCTGACGGAATGGCTGACGGCGACCGAAAAGAGACTCGCAAACTCGGAGCCTATCGGCACACAGACGTCCAAACTAGAGGAGCAGATCTCACAGCATAAG
Seq A exon
GTGCAGAAAACATTTGTAACGTCACCACACTCTCTCCCATGACCACGTTCAGTTTGATTTCCATCATATTTACGTTTATATTACCCATTATTCATTTTGGTAACACTTTCTATGAAGCTCATGCTCATAACGAATTATAACTCTGTTTATTATTATTTAAAATTAAGTATATAAGTTATATAAATGCTAAACTAAGCCCATATGGTGTTATAATAACAGATGTAGCTACATTTATAATAGTGATATTAATATGATCTATTCCAATAGAATTCATGCGATTGCATTGTGTCTGAATTTTAATTCATGGGTGGCACGGTGGCTCCGTTGTTAGCATTGTTGCCTCGTAGCAAAAAGGTAGCTGGTTCGAGTCCTGGCTGGGTCAGTTGGCATTTCTGTGTGGAGTTTGCATGCGGTTTCCTCCAGGTGCTCCGGTTTCCCCCACAATCAAAACACATGCGCTATAGGGGAATTGATGAACTAATATGAGTGTGTGTGTGTGAGTGTGTATAGGTGTTTCCCAGTACTGGGTTGCAGCTGGAAGGGCATCCGCTGTGTAAAACATATGCTGGAATAGTTGGCGGTTCATTCCACTGTTGCGACCCCTGATGAATAAAGGGAATAAGTGAAATCAATGACAGCTTTGGCTACATTTATAATAGTGTTATTAACAATGATTATAACAATTTTAATAACAATATTGTGATTATAGCTGTCAGTCATTTATTCAAATATATATATATATATATATATATATATATATATATATATATATATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATATATATATATATATATATAAAAAATATATATATATATATATATATATATATATATATATAAAAAAAAAAAATATATATATTTTTTTTTTTTTTTTTTATATATATATATATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATATATATATATAAAAAAAAAAAAAAAAAAAAAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTATATATATAGTTTTTATAGAGAGTTTTTTTTCTTGTTTCTACTGTAAATACATATTTTTTTTCTATATAAGTAATTAATATTGTTTATTTTTTCAGAAATAATAGGTTAGGCTGGAAAAATCCAACATTGCGATATTGTTTTCTCTAATATACAGTACGCTATGCATACAATTTTAACTAGTTGACTTGAATAACTCTATCTGGAAAGACTTAGATTGAATGAGATGTTATTAAACAATAAATTATTTAATTATAAAATAGAAATAATCAATTACAAACACATATAAATTCATATATAATTCAATATATAGATAGATATGAGCAATATCACATGAGTAGCAGTGTGATATGGCTGTTTGCCTCTGGTGTGGAGCGTGCATTGGCTTGAGTGCCTTAGTGTCCCACCAGTGACGATATACAGCCACTTCGCACTCTTACACGTGTGATATTGGATTTTTACAACAGTTTGACAGCATAATTGTGTATATTTAAAAAAAATCGAACACAGAAGAGTCTAAAAACCCTTTTGAATGAGGAACTACTTTCTTCCGCCATCCATTCACAGCTGCAGCTGATGTCCGAACAGCAGAAACTTCATCACTGTCACTTTAGAGCTAGTATTTAAATGATTCTCTAGCGTAAATCGATGACAAAACAGGCCATTTTTCTCACATTTAAGGATTATACGGCTGAACAGCATGAAATGCCATCAGTCTACAGAGATTTCCCAGTATTTCTCTGTTGCAATCAGATCACCATAATTAACCCAAAGCAAACACGAGCAGAATACCATGATATAAACACAGCACTACAGCATACAAAAGAGAGAGATCGACTTAGAATGTCACGTACCAGTTTAATAATGATTTGATCAGCTGTAGTTAGAAATTACACTGAGTTTTTCTCCTCTAAAAGCTTATTATGCAATCTCTGTCGCCATCTTGTGGTGGACCGTCAACCGTCTTTGCTCTGCTCAGTATGACAGGCTGATGGCCGCCAACGCGCTGAATCTCCAAAATTATAAATATTTAAAATAGGCACTATCCTTATAAATAAACTGCACAGTTGCAATCTAAACAACTACATTCTCACCTTAAAAAGCCTCAAAGTGTTGTCCAACAGCTGCACTATTTGTCAGACTGTAGTGAGTTTATTGATCTGCTTTTACTCTATGTGGGCGGAGTAATACACAAGGGTGAGGAGGCTGTACGAGTGCTGTTTTTGCAGGATATCGCACAGCTATCAGCCAATCAGATTCGAGAACCATTTATATATGTTAGTATATTTCTACCTGGCTCATTTTATATATTTTAATGTGTGCTATAAATAGAAATCCAAGTAAAACATACATATGAATTATAATCTATTGTGTTATAAACATGTATAGTGACAAACGAACTAAACACATCACTATAAATATGAGTAACACTATTATTAATGTAGCTATAACTGTGATTACAATACAGTAGAAGTTATATATGCATTCATATAATTATGCTCAGTTATGAATATTTATAAGCACCTGTAATGAATCATGAGCTCTATATTAAGTGTTTCCCCTTTATTTCTGTTGTTCCCTCATTTGATCCATTGTTTTTTTTTGTTTGTTTGTGTTATTATGGTTTCTCCATCCTGCGTTTGTGGCTAAATCAG
Seq C2 exon
GCTTTAGAGGAGGAGGTTTTGGGCCGGGGTAAGGTGTTGTACCAGGCCATGAGCCTGGGTCAGTCTCTGCGGACGCTGGGTTGTGTGGATGATAAAGAGACGGTGCAGGTAAAGCTGGAAAACACACAGCGCAGCTTTCTAGAGCTCCAGGAGCTGTGCAGACAGAAGGATGAGCTACTGAGGCAGGCCCGGGCCAATGCGCAGCTCTTCGGAGAGGATGAAGTGGCTCTGATGACGTGGCTGGATGAAGTGCACGCAAAACTGAGCGACGTCTCGGTTCAGGATTACACCCCGGCGGTGCTGGAAAAACAGCACGCAGAGCAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101858:ENSDART00000165987:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.296 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(5.6=11.1),PF0043516=Spectrin=PU(40.6=79.6)
A:
NA
C2:
PF0043516=Spectrin=PD(57.5=56.0),PF0043516=Spectrin=PU(41.1=40.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]