MmuINT1009140 @ mm10
Intron Retention
Gene
ENSMUSG00000026131 | Dst
Description
dystonin [Source:MGI Symbol;Acc:MGI:104627]
Coordinates
chr1:34249479-34250694:+
Coord C1 exon
chr1:34249479-34249638
Coord A exon
chr1:34249639-34250609
Coord C2 exon
chr1:34250610-34250694
Length
971 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
AATGGTACCTGTGCTTTTAGGCT
3' ss Score
6.71
Exon sequences
Seq C1 exon
GAACCGTCAACTGGAAGGGATCTCGGTGGTAGCTCAGGAGTTTCATGAGACCCTGGAGCCACTGAACGAGTGGCTCACAGCTGTAGAAAAGAAGCTGGCAAACTCGGAGCCCATAGGAACCCAGGCACCAAAGCTGGAGGAGCAGATTTCACAGCACAAG
Seq A exon
GTAAGAAGTGTCGCGTGCCGGTGGCTTGTGTTTGTTAGATTATGCATAATTGTGAAACTAAATTCATTTTAAAGATCATCCTTTGGTTCTGTTTACGTTCTTCATTTGTCCACCCCTTTCAGTTTTGTTCTGTTTCGTTGTCTTCCTTTTTTGAACTTTGTTTAGGTCTTAGAAGATGACATCACCAATCACAGCAAACAGTTACACCAGGCCGTTAGCATTGGCCAGTCCTTAAAGGTCCTCAGCTCCAGGGAGGACAAGGATTTGGTGCAGAGTAAGCTAGACTCCTTGCAAGTGTGGTACTTTGAGATTCAAGAGAAAAGTCACAGCAGGTCTGAGCTCCTCCAGCAGGCCCTGTGCAATGCTAAGATTTTTGGGGAAGATGAAGTTGAGCTGATGAACTGGCTGAATGAAGTACATGGCAAACTGAGCAAGCTGTCAGTCCAGGATCACAGCCCAGAGGCACTGTGGAGACAGCGGGCTGAACTCAGGGTACCTTCATTTATTTCTTTTCTTTTGTTTCTTTCTTTCTTTTTTTCTCATTTCAGTTGTTATTCATTTTATCCATTATTATTGGTTATATATTATTTCGTGTCCATTATGATTTGTGTGATTCATTGAACTCACAATAGACTTTTTCTCGTGTGTACATACCTTTAATGACATGAGATTTAACTTATCCAGTTAGCTAGCTTTCTCGCTACTTATTCAGTGTGATTATTCTTGTATTCAACGACCCCATAAGGAACCAATACCTCCACAAAGGCAGTTTTATAAGCCCCACTGTGTGTTCTAAAAGAGAAGTGCCATGCATACTGGAAGACGAGCACAGGGAGGACCTGGGTGGAGCGAGGGAGGGGTAACGGACATTTAAAAATGCAGTGTAGTGTCTCTGCAGATCATTAAACCTTCTCTGAGGTTAACAAGTGCTCTCTCCCCTGCCTCCCCACAAATGGTACCTGTGCTTTTAG
Seq C2 exon
GCTCTACAAGAAGACATTCTCCTCCGGAAACAGAGTGTAGATCAGGCACTGCTGAACGGCTTAGAGCTGCTCAAACAGACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026131:ENSMUST00000097785:61
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(5.6=11.1),PF0043516=Spectrin=PU(40.6=79.6)
A:
NA
C2:
PF0043516=Spectrin=FE(26.4=100)
Main Inclusion Isoform:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCAACTGGAAGGGATCTCG
R:
TGGTCTGTTTGAGCAGCTCTA
Band lengths:
238-1209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types