MmuINT0055824 @ mm9
Intron Retention
Gene
ENSMUSG00000015467 | Egfl8
Description
EGF-like domain 8 [Source:MGI Symbol;Acc:MGI:1932094]
Coordinates
chr17:34750954-34751285:-
Coord C1 exon
chr17:34751115-34751285
Coord A exon
chr17:34751037-34751114
Coord C2 exon
chr17:34750954-34751036
Length
78 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CTCTTTTTCCTTTGTCCTAGTTC
3' ss Score
9.35
Exon sequences
Seq C1 exon
ATGTCGATGAATGCAGGGCCAGCCTTACCCTCTGCTCTCATGGCTGCCTCAACACACTGGGCAGCTTCTTGTGCAGCTGTCCACACCCCCTGGTGCTGGGTCTCGATGGACGCACCTGTGCAGGGGGGCCTCCAGAGTCCCCGACAAGTGCCAGCATCCTCAGTGTGGCAG
Seq A exon
GTGAGTGTGGGTTGCCTGTGGGGTGGGCCTGGTCTGTGCTGCGGGGGAAGGCCACACTCTCTTTTTCCTTTGTCCTAG
Seq C2 exon
TTCGGGAAGCAGACAGCGAAGAGGAGCGAGCCCTGAGGTGGGAGGTTGCAGAGCTTCGTGGGCGTCTGGAGAAGCTGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015467-Egfl8:NM_152922:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=NA C2=0.024
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=69.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCTTACCCTCTGCTCTCA
R:
CTCCTCTTCGCTGTCTGCTTC
Band lengths:
178-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: