MmuINT0055970 @ mm10
Intron Retention
Gene
ENSMUSG00000036893 | Ehmt1
Description
euchromatic histone methyltransferase 1 [Source:MGI Symbol;Acc:MGI:1924933]
Coordinates
chr2:24837576-24838868:-
Coord C1 exon
chr2:24838701-24838868
Coord A exon
chr2:24837659-24838700
Coord C2 exon
chr2:24837576-24837658
Length
1042 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
3' ss Seq
CCGTCCTTTGCCTTTTACAGACC
3' ss Score
10.61
Exon sequences
Seq C1 exon
CATTGCTGGAGCCCCAGAGGATGAAAGATCGCAGAGCACAGCCCCCCAGGCACCAGAGTGCTTCGACCCTGCCGGACCGGCTGGGCTCGTGAGGCCGACATCTGGCCTTTCCCAGGGCCCAGGAAAGGAAACCTTGGAAAGTGCTCTAATCGCTCTAGACTCTGAAAA
Seq A exon
GTAAGAGCCAGGCTGGTGTTTTTTGTTGTTGTTGTTTTGTTTTTGTTTTTCAGAGACAGCTTAGAGTCATGGTCTTCCCCAGGGATTCTTAGTAGTTTCCAGCTTTTTGAATAACACTGTTCATCAAAAGGATGAACATATGAGGTGTCAGCCTCATATGTCTTTCCATTGTCTGGGATAAATTGTTGCAAATTATTCTGTTTTATGCAAGAGCAAGACGTGAGGTTATTGTTATCCTGAGCATGACCTTTATTGAGTGAGCTGTTGAAGGCAGCTAGAGCACACACTCTATTCCACGAGCTCCTACCTTGCTGCCTAATCTCTGCCTAATGTAGTCTAGTCCCTACACTGCAGTCTTTCTTGGTTCACAGGTCCACCTGTGTCCTCTTTTCTTGAGGACAGCATTACATTCCTTAAAGAGGTTTATCCAGGTGACCTCTAAGTTTACTTTGTTCTGGAGGGAAAGTAGGTCACTCATTAACAAACAGACAAGTCCCTCTGTTACTCTTCCTTATTCTGAATAGTCTCTCAGTATTTCTGTCCTGGCCCATCTGATGATACCCATAGTCCCTATCTATTGACCAGGCTCCAGACTTTTCCTGACCCTCCACCTCTAACCCCTATTTATGAGTTGATGTAAATTTCATAGCATACATTGGCTGAAGCCCCTTCCTTGTTGCTATAGGGTATTTACTATCACCCATGATCGTTGTCATCATTTGAGCTGTAGAGGTCACCCTGGACGTTTTGCCTGGCACTTAGTGTGCCATCTTGCATGTCAGTGATGACTCGTGCATGATGACTCCTTGGGATCCCCTGAACCTCTGGTGCAGCAGCTTGTCTGTACCCGAGGAAGGCTCTGTGTCATGTTACCAATAGTGTTTTAGTATGTATCATTTTAATGACATCTGAAGACAGTTGCTTGGGGCAGTGCCTCAGGGATTTAAACATGCCAGCAAATGCTGTCAACATCAGCTGTACCTATTGCCCTGTTGTTTTGACAATAAGTCTGGTGCTGATTGCCGTCCTTTGCCTTTTACAG
Seq C2 exon
ACCCAAGAAACTTCGCTTCCACCCAAAGCAGCTGTACTTCTCTGCCAGGCAGGGTGAGCTGCAGAAGGTGCTTCTCATGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036893:ENSMUST00000147147:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.917 A=NA C2=0.130
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(15.3=22.8)
A:
NA
C2:
PF127962=Ank_2=PU(17.9=58.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCCCCAGAGGATGAAAGA
R:
CCAGCATGAGAAGCACCTTC
Band lengths:
244-1286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types