RnoINT0053545 @ rn6
Intron Retention
Gene
ENSRNOG00000007242 | Ehmt1
Description
euchromatic histone lysine methyltransferase 1 [Source:RGD Symbol;Acc:1307588]
Coordinates
chr3:2009504-2010823:-
Coord C1 exon
chr3:2010656-2010823
Coord A exon
chr3:2009587-2010655
Coord C2 exon
chr3:2009504-2009586
Length
1069 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
3' ss Seq
CTGTCCTCTGCTTTTTACAGACC
3' ss Score
10.55
Exon sequences
Seq C1 exon
CATTGCTGGAGCCCCAGAGGATGAAAAATCGCAGAGCACAGTCACTCAGGCACCAGAGTGCTTCGATCCTGCAGGGCCAGCTGGTTTCGTGAGGCCGACCTCTGGCTTTTCCCAGGGCCCAGGAAAGGAAACCTTGGAAAGTGCTCTCATTGCTCTGGACTCTGAAAA
Seq A exon
GTAAGAGCCTGCCTGGTGGTTTGGTTTGCTTTTGTCTTTGTTTTCAAAGAGACAATTTAGAGCCAGGACTTCCTATTGCTTTCCAGCTTTTTAAATAACATGGTTCATCAAAAGAACGAACACATGAGGTGTCAGCCTCATGTGTCTTTCTAATGTCTGGGATAAATTGTTGCAAATTGTTATTCGTTTATGCCAAGAGTGAGAAGTGATATTATTGTTATCCTGAGCATGACCTTTATTGAGTAAGCTGCCTGCAGGTCCCTAGTGTACACACTTTATTCCATGGGCTTGCTGCCTAATCTCTGCCTAGTGTGGGCTAGACCAGGTGACCCCTCAGACTATTTACTAGTCCCTACACTGCAGTCTTTCTTGGTTCACAGATCAACCTGTGTCCTCTTTCCTTGGGGACCGCGTTACACTCCTTAGAGAGGTTTATCCAATTGACCTCTAAATTTACTCTGCCCTGGAAAGAAAGTAGGTTACTCGTTCTTAACAGACAAGTTCCTCTGTTACTCTTCCTTATTCTGAATAGCCTCTCACTATCTCTGTCCTGGCCCATCTGGTACCTATAGTCCCTATCTACTGACCAGGCCCCAGTTTTTTTCTGACCCTCCACCTCTAATCCCTGTTTATGGTTCAATGTAAATTTCATAGCAATAGGTTAGCTCAGGTTTCTTCTTGATGCTAGAGGGTAGTTAGTATCACCCCGTGACAGTCATCCTCATTTGAGCTGTAGAGGCCACCCTGGACATTTTGCCAGGCACTTAGTGACTAGTGTATGATTTCTCCTTGGGATCCCTTGACCCTCTATAATGTAGCAGCTTGTCTGTACCTGGGATAGGCTCTGTGTCATCTTACCAATGGTGTTTTAGTATCACTTTGATTATGTCTGAAGACAGTTGCTTGGGTTTCTGTCATTGTTTTATTTGTTCAGTTGTTGGGGCGGGGGGGGGGGCAGATCCTCAGGGATTTAAGCATGCTGGCAGATGCTTAAATTGAGCTGGACCTCTTGCCCTGTTGTTTTGACAGTAAGAGTCTGGTACTGATTGCTGTCCTCTGCTTTTTACAG
Seq C2 exon
ACCGAAGAAACTTCGCTTCCACCCGAAGCAGCTGTACTTCTCCGCTAGGCAGGGTGAGCTGCAGAAGGTGCTTCTCATGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007242:ENSRNOT00000066777:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.754 A=NA C2=0.069
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127962=Ank_2=PU(18.1=58.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGCCCCAGAGGATGAAAA
R:
CCAGCATGAGAAGCACCTTC
Band lengths:
245-1314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]