GgaINT0126648 @ galGal3
Intron Retention
Gene
ENSGALG00000008472 | F1P2X9_CHICK
Description
NA
Coordinates
chr17:2466049-2466906:+
Coord C1 exon
chr17:2466049-2466317
Coord A exon
chr17:2466318-2466823
Coord C2 exon
chr17:2466824-2466906
Length
506 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGG
5' ss Score
6.6
3' ss Seq
CTCTTTCTCCACTGCTGCAGACC
3' ss Score
8.32
Exon sequences
Seq C1 exon
GCTGTCTGTCAATTTAAAATCAATTTCCTTTCCTTCTTTGGCGTAAGATACACACAGTGTTGTATATTTTTAATGGTTGTGCTTTGGTTCTATCTCCTTTTCAGTGTCACTGGAACGCGGTTGTCTGAAGAAGACAAGCCAGAAAGTTCAGCTGCAGAGGGATTTGACTTAGCTGGATCTTCAGTTTTTCCAAAGCCTACTACTAGCCTGACCCAGGGACCAGTTAAAGAAACTCTGGAAAGTGCCCTGATTGCCCTGGACTCTGAAAA
Seq A exon
GTAAGGAAAAAGCCTCTGGGTCTCCCCAGTTCCCAGTAGAGCTGCTTAACCTAGGGAAAACTGAGATTTAGCTTCTGTGGATTTTGACTCCACTCAGATCTTGTGTACTTTTATTCACTTCAGTCACCTGTCACCCTCAATGGATTACTGATTCCAGGAAGTTCTTAAAGCTCTAAATGTCATAGTGATTGTCCAGGGGACTTAGCTTTTCACTGGACCTCTAACTTCAGCTATAACTACTAGGAATTCCCATTTATAGTGGTAAGATCCAGAATTTTTTATTAGCAGCACTGAGTAGGTATGGCCATTGTTAGAACAAGGCTGACTGTGGCCAAAGCAGGAGGTTTGAACGTCTCCTAAAGAGTTGATGTTCTTTGGTTTCGCTGGCGCTCTGGAGCTGTACCGTAGGAACAAACTTTCTTGTGCCTATGGTGTGGGTTGGGGTAAAAAATATGGGGAATATTCTTCAGTGTGTATTAATTCTGCCTCTTTCTCCACTGCTGCAG
Seq C2 exon
ACCCAAGAAGTTACGGTTCCATCCAAAACAGTTGTACTTCTCTGCGAGGCAAGGAGAGCTGCAAAAAGTCCTGCTTATGTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008472:ENSGALT00000013807:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.224 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAATTTCCTTTCCTTCTTTGGCG
R:
CCAACATAAGCAGGACTTTTTGCA
Band lengths:
334-840
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]