DreINT0061800 @ danRer10
Intron Retention
Gene
ENSDARG00000026634 | ehmt1b
Description
euchromatic histone-lysine N-methyltransferase 1b [Source:ZFIN;Acc:ZDB-GENE-080515-3]
Coordinates
chr21:14563261-14563632:-
Coord C1 exon
chr21:14563432-14563632
Coord A exon
chr21:14563344-14563431
Coord C2 exon
chr21:14563261-14563343
Length
88 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
3' ss Seq
TCCATTTCTACTCCCTCAAGGCC
3' ss Score
5.73
Exon sequences
Seq C1 exon
GTCCACTCGGCTCTCTGTACTTGGAGAGGGAAAAGCAAACAGCACCTTACCCAAACCTTCAGAATCACAGGACACATCTTTGTCCCTTGTGGGTTCCAAAGCCAGGTCTGTAGCGATGGCAGCTGCACCTGGACTTCCACTTCCACCAGGACCACCTAAAGAAACTCTGCAAAGTGTCCTGCTGGCTCTAGATGCTGAAAA
Seq A exon
GTAAGAAAACCATCTATTACAACTGTTTAATTTAGCACCTTTTTCACTTTTACTGGTTAATTAGCAAATCCATTTCTACTCCCTCAAG
Seq C2 exon
GCCCAAGAAGCTTCGGTTTCACCCAAAACAATTGTACATTTCTGCCAAACAAGGGGAGCTGCAGAAGGTCCTACTAATGTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026634:ENSDART00000124223:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.809 A=NA C2=0.034
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(13.1=16.2)
A:
NA
C2:
PF127962=Ank_2=FE(33.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCCAGGTCTGTAGCGATG
R:
TTCTGCAGCTCCCCTTGTTTG
Band lengths:
170-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]