MmuINT0055985 @ mm10
Intron Retention
Gene
ENSMUSG00000036893 | Ehmt1
Description
euchromatic histone methyltransferase 1 [Source:MGI Symbol;Acc:MGI:1924933]
Coordinates
chr2:24877455-24884702:-
Coord C1 exon
chr2:24884146-24884702
Coord A exon
chr2:24877627-24884145
Coord C2 exon
chr2:24877455-24877626
Length
6519 bp
Sequences
Splice sites
5' ss Seq
CTGGTAATT
5' ss Score
5.99
3' ss Seq
TTACTTGTCTTTGTTTGAAGCAT
3' ss Score
7.62
Exon sequences
Seq C1 exon
ATACACCTATGGCTGCTGATGAAGGTTCCACAGAGAAACAAGAAGGAGAGACTCCCATGGCTGCAGATGGAGAAACAAATGGGTCTTGTGAAAAGAGTGGGGATCCCAGCCATCTAAATGCACCCAAACACACTCAGGAGAACACAAGAGCTAGCCCACAGGAAGGCACCAACAGAGTGTCTCGGGTGGCAGAAAATGGGGTTTCAGAAAGAGACACAGAAGTGGGGAAGCAAAACCATGTCACAGCTGACGACTTCATGCAGACATCTGTCATTGGCAGCAATGGATATTTCTTAAATAAACCAGCCCTGCAGGGGCAGCCGTTGAGGACTCCCAACATTCTAACCTCCTCGCTTCCTGGTCATGCTGCAAAAACTCTTCCTGGAGGAGCCAGTAAATGCAGGACTCTGAGTGCACTTCCTCAGACACCAACCACAGCACCCACTGTGCCTGGGGAAGGGAGTGCAGACACAGAGGACAGAAAGCCTACAGCCTCGGGCACTGATGTCAGGGTTCACAGGGCACGCAAGACCATGCCGAAGTCCATCTTGGGCCTG
Seq A exon
GTAATTTTGTCTTTTCTTTCTCCTCCTTTGCATTAATGAAAACAGATAAACTTTAATTCAACAGAGGGAAAAGCCAGTTAATGGCAGTAGTCATCAATAAGTAGCTAACATATGAACAGCAAAGCCAGGTGATACATTGGCCTTTTAAAAAAGGCTTTTTCTGAAGGCTTTTCTTTGCTCTAAGATGAGTCATCTGTCAGGAAGCATCCTCCCCAACACAGGGTTTCTCTGTGTAGTCCTGGCTGTCCTGAAACTAGCTCTGTAGACCAGGTTGGCCTCAAACTCACAGATCTGCCTGCCTCTGTCTCCGAGTGCTGGGATCAAATGAACCACCACTGCCCTCAGAAAACTACTTTTTCTTCTGCCCTTTCTGAAAGGCTTGCCTTGTTCAGGGTTACTGAGAGCAAGAACTGTCTGACAGTGTCCTGGGCATTGAGTGAAGTCACTGTCTCTGTAAGACTCAGCTGGCTGGACTGCTTTGTCTCAGTCTGCTTTACGTGGCACGTATTCGATGCATACTTTCAGAGTGGAATACTATTGTTTTGTTTCATGATGTGGATTTTGCTTGGGTGTATTCTACATTCACAATCATACTCCTGTGTGATTTCTAGTGCTCTGTATGTGCAGACCATTTGCTGTTTTCTCTGTAGCCTTTGGGGCTTCATGCTTAGAACCTTTCCCCAGGTCTCTGTCAGTCTGTGGATTTGTGATGTCAACTTCAGAAACATGTAATGTATAATGTGTGGTTGTTAATTTCCTTCCCATAGAATCCCTCTTGCGTGCGAGCACCATGTCATTTGTGTCCTTGTACAGTGGTTCTTTGCCCATTTTCTACTTCCTGCTTGATGCTTTAACCCTTTATATCATATGCTTTATGTTGATGTTTAAAATTTTTTTAATAAGATTTATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACATTCTAGAAGAGGGAGTCAGATCTCCTTATGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCAGAAGAGTAGTCAGTGCTCTTACCCACTGAGCCATCTCACCAGCCCTGGTTTAAATTTTTTTTTTTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCGGAGTGCTGGGATTAAAGGCGTGCGCCACCATACCTAGCTGTTTTAAAATTTTAATACCTACTTTTTTATACCCCAAGTTTCTAGTTAGTCGTTTTAACTTTTAAAAGGAAGTTAGGTATTTATGTTTTGGTTTTTGATAGGGTTTTACTTAGCCCAGGTAGGACTCAGACTCAAATTCCTGTTATGCCTGCCTCTACCTTCCAAATTCAGAAATTGTGGGTATATGTCATTATGCCCAACTCATATTTCATCTTACCACACACAGTTTACTGATTATGGGACTAAAGAGGTGGCTCAGTGAGCAAAGTGTTTGCTGAGCAAGAATGAACACCTGAGTCCATCCCCAGCACTCACATAAAAGCTGGATACAGTGTCACATTCTGGTAATTCTAGTGTTACTGTGGTAGAAAGAAGAGGAAACCTGGGTTAGGCTGGCTAGCCAGGCTAGTTGAATCAGTAAGCTCCAGATTGAGTTGAGTGAGTCTCTCAGAACAATCAGGTGGAGAAGTAATTGGGGAACAAGATCTAGTGTTATTGATCTTTGACATATAGATAGACAGTCACCCCCTCTCTCAGAAACACACAGATGGAGAGACATGAAGGTGATGGATGGGTGGGTAGAGAGATACTGCAATTCTTCCACAGTCTCTTAAGGATTCTGATTCCTCTGAGAAGTTCTAGTTTGATGCAATAGCTTTTAATTGATGGTTGTTTTTCCAACATTTTCTTGTCTCTATCTTTGTGGGACTGGTTCAGATTGCCCAAGTGCTATGTGTGTATTAGCAATCACTGCTTTGGGTATAGGGTGGGGCTGCTTGCCACCAGACAGCTTTGCAGTATGGAGTCCCACAGCCATCAGGTGTTCTGCCCTCTTGCCAAACATTCATGTGGTTTAACCTTAAGGAACACCTGTTGGTCACCTTGGCCTGGGGAGACCCAAATTCCCAGCTGAACTAGCTTGATAAATAGAAGAATCTGTATCTCCAGGCCACCAGGGGTCACCAGGTGTTAGCTACCTCTGCTCCATTTGTAAAGTACACGTAACATGTCCTATAAAGATGGATTCCACTGACTGAGAAACAGTCTAGGTCTAGGGAGAAAGAGTCTAAGGTAAACATAGACTGGGGAGCCACGGGTGGCCTGACTCTACAGACATCACAGACGTCACCAGGCTCCTAACCATATCTATTGTCAGCCTTTTGGGAAGAAAACAGGCTATTTATACATTTCTTCCTTTGAAGAGACAGTGCTGCGTGTTTAACATTCCTGGCTTCCCAAGTGTATCTGAGCACAAGGACCTTGTGCCTTCCTTCTCTAGCTGCTCATCCAGAAGATCCTAGGTTGGTTCCTAGCATCTGTATCAGGTAGGTCACCACCTATAACTTCAGCTCCGTGAGCTCAGATGCTTCTGGCTGCCTCAGGCACCTGCACTGATTTACACATACCCATATTCAGACTAACTCACCTATAATTATAAATTTATAAGAAAAAGAAAACAAAAACAAAAAGAGGGCGGGCACTTGGTAATTCTAGTACTCAGGAGATAGAGGTGGGTGGATGTGAATTCTAGGACAGCTGGGGATACATAGTTTTTTGCCACAAAAAAACCCACCCAAACAAAACAAAAACAAACGAGAAAGAGGATAATGAAGGGTGAATATATTCAGAATACATTGTATACAAGTATAAAAGTATCATAATGCATCCTGTTATTATATATAATTAAAATACAATAATAGTAAAAGAAAAAATTCCAAGACTATTAAAAAGTTGTACATTAAGATATGATAGTAGGAAAAACCCAAGAAAGGGTTTTGAAATAGGAAACTTTGAAAATAATATTAACGTATATATGTGCATTTTCCAGTCTTCTCATTTAAAAAGTTTCAAAATTATATTTTATTTGTTTATTCATTTTTTGTACATGAATGTGTATGCGAGTACACAGTGCATGTTTACCATAGTCACATGGGCAGCTTGCAAGACTTGGCTCTATCCTTTCACAGTGTGGGTCTTGGGGATTGAATTTAGGTCATCAGTGTTGATAGCAAGCTTTATTGTTGGAGCTACCTGGGTTCTGGTGTCCTTGCCAGCATTTGTGCTGCTGCTGCTGGTGGTGTCTGTGTCAGTGCCTTGCCAGGATTGTAACTTGAACTTCCTTGAACTTTCAAATGTGCTGCTCTTCTCGGTGCTCATTTGCCAACTTTGTTGTTGTTCATGGATAAATAACCTTTTACATTTTTATTATAAAGTATTTTATTAGCTTTTAAGATTAATCTTGCTTCCCTTCCCTCCCTTTTACACATGCACTTCTGGTTTTCAACTCACAGAGGTAAATAAATTCTCAGCTCCATGATTCCTGGGTAAGGGTTCTCTGCCAATGAGGCGTCTTGTCAGTTATGAGGCACTGGTCCCATGTCTGTCTGTTCATGTCCCCTGTCCTGCTCTCCTCCATTCCTTCTTAGGTGTCCAGGTCTTGTCTTGAATTTGCTAGGCAGACCTTGGCTGGCTTGCTTCAAACAGCGATCTTTTGCCTTCTGTCTTCTGAGTTAGTGTGTCCAGTCTTGGGCAGTTAGAGTTGTGACCACTTATGTTTGTCTGTAGATAATTTTTCCTATTTCTGTGTTAGGTATCCACGAGTATAATTGCCATGGTGTGCAGCAGCTCTTTTCTCTATCTCCTCCTGCTTGCTAGTCTTATACAGTTGCTTCCCCCTTACCCTGAGTTTTCATTTAGATGAACCGAAGTTTGATGTGTCATTTCAATTGAATTCAGCTGACCAATTTTATGTTCAAGGCTGTGTTCTTGGTGTCATTTGTGAGAGCTCTTCACTTGACTTAGATCTTTAAACTTTCTCCAGCTTCTTTCCTGTCTGAATTGTACATGCTTTATGAGTTATTTGTAGAAGTTCTCTGCTTTTCTCTCTGGATTTGTTTCTGCAACTTGTTCCTACATGTTCTAGCAAATTCAGTTTAGATGTGTAGTGGGAGACAGTTCTGCCATGCCATATGGGAGATTGGTTCTTGTTAATGATGGAATTGAGTGTTGAGTTCTGATTGTAATGAATTGTCAGTCTGAGGACTCACACTGCTGCCCAGGTTATGTCTGGGTAGAATCCTGAGCAGTTAATGCTAGTAGGTGGATGAGAAGGGGATATGTCTGTGTGTGTGTTTGGGGACGGGACTTGGGGGTAACAGTGTTTTTGTGTGTGTGTGTGCATTATCTATTGTATGTGGTATGAGGTAAGAGGTCTCTTTCTTCAACCTCTTCCTCCTTTTTTATTTTTACTTTTTATTTGATCATATTCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCGAGACAGGGTCTTTGTACAGAGTTCTGACTGGCCTCAAACTATATCCACCTCTGCCTCCTCAGTGCCATAACATCTCCTAGGATATTCTGATCCCCTCTCCCCCTCCCCTCCCCCCTCCCTTCCCCTCTCTCCCCTCCCCTCTCCTCCCCCTCCCCTTCCTCTTCCCCTCACCCCTCTCTCTTTCTTTCTCTTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTTTTCCTTCCTTTCTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCTCTCTCTTTCTTTCTAGATTTATTTATTTACTATGTAAGTATGCTGTAGCTGTCTTCAGACACTCCAGAAGAGGGTGTCAGATCTTGTTATAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTTTGGAAGAACAGTCAGTGCTCTTAACTACTGAGCCATCTATCCAGTCCTCAGATACTTTTCTTTTCACTTTTAAAACACCTTTTATTTTTATTTTATTTTATTTTATTTTATTTTATTTTATGTGTATACATGTTTTGCCTGCATCCATATCTGTGCACTATGTGCATGCAGAACCCACAGAGACCAGAAGAGAGTGTCCCTTGGATTGGAATTACGAATGGTTGTAAGCTATGATGTGGCTTCTGGAAATTGAAGCAGGGTCCTCTGTAAGAGTAGCCAGAGCTCTTAACTACTGAGCCATCTCTCCAGCCCTTCTCCTCCTTTAAGAACAGGGCCTCACTAGGCCCTGGCCTAGATCCATCTATGTCTGCCTTCCAGCATGCTGGGATTAAAGTCCTTTACCACCATACCTGTTATACTTTATTTTATATGTACATATTTTATGTTCTCAGAAACCGTGTATGCCGAAGAAAGCCTTCTCTTTAAATGTCTTACATTATTAGGTAGTTACTTGTGTGCACAATAAAATTTAGTTCAAGCTGAATTGTACATTGCTTAAATTCACTCCAAAACATCTGTGAGTTTATGAGCATAGATAGAAGGGAGGTTTAGTAGTATAAAAGCAGTCTGGAGTTAAGGGCAGGAGTGTTAAGTACTTGGGATTTGTTATTGGTATCATAGGTTACTGCTTTGCAGGAAGCTAGACTAAAAACCAGTTAAGGAGATTGAAAGATGACCCTGCCCCTTGAACACTACTTTTAAGAGACAAAGCATCCTCCGAGAAATCTAGCCTGGCCTCTCCGTCTCTGACTGCCCTGCAGGTATAGCAGCAATATGCTAGACTTCTCTACTTTTACAGCTTAGCTTCTTTTTTGTTCTTTTTCAAGACAGGGTTTCTCTAGTCTGTAACTATTCTGGAACTTGCTCTATAGACCAGCCTGTCCTTGAACTCAGAAAGATTTGCTTGCCCCTGCCTCCCTAGTGCAGGAGTTAAAGGTGTGTGCCGTCACTGCCTGGTGAATTTTAGTGGGCTTCTTATCTAAGTGTCTCCAAGTCACTATTCAGTAGTGAAGACTATGTATTATTTTATCACCTACCCCTTAGAAAAACTTACAAAAATAAGGAATTAGCTTTGAGAGTCGCTACCTTCCTTCTTGTCTCCTCAGTTGGTATCTAGGATGGAATGGTACTCTTGTGGCAAAGAGGAATTATTAAATGACCTGTTTATTAGAGATGCATTTAAACTGTGAAATCAGCTGTCTCATACCTGATCCAGCAGAGGATGGTAGGACTGAGTGTTCTATTCCTATGGTTCACGAGTTAGGTTCTTTGTAAATGGCTGTACTTCTCAGATTTGTGGACTTTCTGCCTTCCTCAATAATGGCCTTTCAGTAAATGGGAAGTTTTTAAACAGGGATTGATTTTTGGATGCGCTTTATTCCATTCACCATCTACTTCTGCAGTCATCATAATTACTTGTCTTTGTTTGAAG
Seq C2 exon
CATGCAGCCAGCAAAGACCATAGAGAAGTTCAAGACCATAAGGAACCAAAAGAGGATATCAACAGAAACATTTCTGAATGTGGACGACAGCAGCTTTTACCAACCTTCCCAGCCCTCCACCAGTCGCTACCTCAGAATCAGTGCTACATGGCCACCACAAAGTCCCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036893:ENSMUST00000147147:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.976 A=NA C2=0.895
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types