MmuINT0061811 @ mm9
Intron Retention
Gene
ENSMUSG00000030956 | Fam53b
Description
family with sequence similarity 53, member B [Source:MGI Symbol;Acc:MGI:1925188]
Coordinates
chr7:139970819-139978618:-
Coord C1 exon
chr7:139978551-139978618
Coord A exon
chr7:139971069-139978550
Coord C2 exon
chr7:139970819-139971068
Length
7482 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
TTGTCTTTTTGTCTTTCCAGGCC
3' ss Score
11.75
Exon sequences
Seq C1 exon
GTCCTGTTGTTCAGCCCATGCTGCTCTTCATCCTGGAGGAGAAGGTGCTGTGTAGCTCCATGCTGTCA
Seq A exon
GTAAGTACTAGTTCCCCGGTGGCCTGGGCCCATTTCCTTCCTTTTGAGATGGCTTCACACACTCCAGGCTGCAGTAAGTTCTCTCACGTGGCAAGTGGTGAGAACTGGAGTAGTGCACATAGGAGCCCATCCATCTCTTTGTTGTTTCTCATTGATAAACAAGTGCTTGACAGGCCACGAGTGCTGCTGGCCTCAGTATCAAGACACAGCATGGGCTCTCTTGTACCCATGTGCAGATCTGTTCTGCTCTCCATCACAGGACATCTGTGTCTTGGAATAATGTCATTCCCTTCCCTCTCGAAATGTTTGCATAAGAAGAACAGAAAATCCCTGTGACAGTGAGCCAGTGATTGGAATGCCCTAGAAAACGTAATTTACTATTGTGTTTTGTTTCCTCCCCTCTATTAAGAGGGGGGAGGGGGAAGCAAAGGCCAGGCCCCTTTTTAGCTGTGCACTGTAACTTCCAGGCCTTCCTCAAATATGAAACTCCAATGGACTTTGATTACCTGGAATTCTGGCCCAGGAAGCATGTATTCATCCTATGACTGAAGAGAACAGCTTTTATGACATGTCTCGTTCTGAAGCAGGCATAGGGTTTGGTCCTTCTTCGTTTACAGATGTCAGGGTGCTTTGCACTTGCAGGAAGGAAATTCCCCTCATCCCTTGAGCGCCCAGCGTCAGCAGTGAGCACAGTGACAGGATTTTCTATTTTTAGCCAGTTAGCGAGGACTTCGTAAGTGTCTGCTCTCTGACATGTGCTAAGGGTTTTGGTGGATCTAGTGGTAATTCCGTACTCCCACCAAATAGGACATTATTTCCTAACCTTACACCTGAGATCACTAGAACACAGTTTTTATGCATTGCCTTGTGTATTAGCAACATAGTACAAGCTGTCCAGGGCCAGCTACATAGTTCACCTTGGACTGATCTTGTAAGTACAGCTGTGAGACTTTCCAGCTTTCTGAGGTTGATCCTCATCCTTGATTAGCAGATAGACATTGGTGAGGCTCCTGCTGTGTGGCCCAGGACTGAGTTTGAGGAGGCCACACCTAAGTTGCACACATTACACGTGAACTTTGAGAGAAGGGTAGAGTGTGCTGTGGTAGGCATGCAATGGAAGACACAGGCCCAGGGGACAGTGGGAAGGTGGATGAACGCAGATCTGGCTGGAGTACTGTAGCTCCCTCCATGCCTGGGAGGGGCTTCTGTATGCGCTTAGCCGAGCTGCACAGATAAAGATGAAAAGTGATGGCTTTGTATCCTTTTTTCACCTTCAAGACAGCCCTCATCTGTTCATTCCTGCTGCCTGTAGTGTGGCCTGTACTGCTGTGCTAACCTATATTCCAGAGGGCTGGTGCTTGCCCTAGATTGCTTAAGAAGAGCTGCCTTCGAGAGGAATATGCACCATTTCCGAGTTAAAGCAGTGCGTGTGTGTGTTTGTGCATGTAAACATGTGTGCATGTGCACACAGGTAGGTATAGGTGTGTATGTGGTTGTGCGCATGCCTGTGTGCGTGCGTGCATGCATTCATGCATGTGTATTCTAAGACAGGGTCCCTCTAATTAGCCAGAACTTGCCAAGCAGGCTAGGCTAGCCAGTGTGCCTGAGGGGATCCTCTTGCCTCTGCTTCCCTAGTGCTGGGATTATGTGCAAAGTTTAGGGCTTTTCTTTTCTTTTCTTCCTTTCTTTGATTCTTTCTTTTTCAAGTAAGTCCTAGAAATTTAACTCAATTCTTCATGTTTGCAAGGCAAGCACTTTACTGACTGGGCCATTTCCACAGAGTCTAGTAGATATGACAGCCTTTGGAGTTCAAGCAGCTATAAATTGAAGCTTTGTGTTTAGTAGATCTAAGTTGAGGCTTGTCAAATAGGTAAGCTTCAGGTTTAGTGAGAGACCCTGTCTCAAAAAATAATTGTGCACATACCACACACACACACACACACACCACAGATACACACACACACACACACACACACACACACCCCACAGATACACGCAGGTAGCTTTTCGTGAATACAGATTCCACTGTGGGGTTTTCTTAAATCAGCATTGGTACTGAGCATATTCTTAATGCTAAATTCTGACTAGAGAGGCTTCCTAATCAATCTTCCATGAGTACTGCGGAGCCTGGGCTAAGTTGAAGTGTGTACAGTGGTGGGGATGCACAGTCTCAGGGCCTCCCTCAGGCGGAAATTGCAGTAGCTTTCTTGGTCTGGAAGGTAGCACTCTGGATGAAGTCCCTAAGCAGCTTTTCATGCAAGGGTACCCCGCTGGTGGGTGCAACTCCCTTCTCTGGGCAGCCAAACCAGGAGCAGGCCTGCAGGACCCAGCTGCCTCAGCGATGCTCACTCTTCTGACTTGTTGTAGAATCTGATAACAGATTCTATAGACTGTGTGATCACGGAGACAGGCACTCCCCAGGTGTTCATAAATGTGTTCCTGGATCCTGACTCCAGATGACTTGTCACGAAAGTTTCAGTGTGCATAAGACCTTCACAAAGATCGTATGGCCTTGCCAGCTCCTGCTTCCTTTGCTTAATGAGGGGAAGTGGAATGCTAAGACACTGTCAGGAAAATCAGTGTCTGTGGCCAAGTCCACGCTTAGGTTCCGGTCAGGGTTCCATTTTTAAGACACTGAGATGCTGCTGCCTGTACAACCACACAGACTGAATAGAGATGTTAAAAGGAGGAAGAGGTTCAGTTGTCCTGGCAATTTCTAGTGTGGTCAGTTTCTTTTAAAGGATTAACCTTTCAAAGTGTATTTCAAAGTGAGGGAAGGTGATGATGGACACCTTCCCTCAGTGAACTCTTGCAGTCTTAAGATTCATGGGGAATTGTGTAGTTTGCAGAGCTTCCGTGTGTTAATCCATTTAGCATGCACTCCTGCCACAGATGCTCCATATGTGCTCAGCATCATTCTCTGGGAGCCAAGTGCCTGACCTACAGGTGCTATCGCATGGCTGCTTTCAAGAGTGTAAGCCCACGAACCTCACTGAAGTATATAGGAGAAAAGCGAGACAGTTTCCAGTTAGGAAGGACTTGTGTGAAAGCAAAGCTATTCCTGTCCCTGTGGTATCAGAGAGAGGCCCAGGCTAGGTGTGGTAGTCCACAGCTATAGTCCCAGAACTCAAGGGACTGAGATAGGAGGATTGACACTTGAGGCCAGCCTGGGCTACAAAATGAGTTTCAGGCCAGCCTGGACTATAGGATAAGACCCTGTACCAAACAGAGGGGCAGAGAAGAAAGCATGAGTGTGCTAGGGAGGGAAACAGCCAGGAGTAGGCCTAGACTTGGGTGTTGGTCTTACCCTGCTGGCGCTGTGGCACTGGCAGGTTCTTCTGGCTTTGAAGTGTGGGTAGTTTAGCTTGTTAGACTGAAGCCCAACATCAGAAACAGGAAACAGACATGGAATAGTGGAGGTAGGAATACTTCCGTCTTCCCTAGCGTATCTTGTGTTGTTTTTCTGACACATCTTCCAAACGCCTGACAACTGCTAGTCTTCAATTCTATACTTTTATCATTTCAAGAGTTTGTTACAAATGGTATCATATAGCAATTTAACCCTAGGGGAGTCACTTTTTTAAGCCCAGAATAATTCTCTGGGAGCTCGTGGCGTCTGAGACTAGTTCCTCCTTTTCTGCTGAGTGGTCTTCCCTAGAATGGATGAGCCACTGTTTAACCAATCACCACTGACGGACATTTGGATGGGTTCCTGATTTGACTGTTGTGAATAAGGTATTTGTGGCAGGTTTTGAGGTGACCATGTTTAATTTTCCAGGACAAACGCTGAGGAATGTGATCGATTGCTAGGCTGTGTGGTAGTTGCCTGAGTGGGTTTCTGAGGGGCACGCGTGGGATGGACAGGTGGGCGCCTGTGGGAAGTTACAAGCGTGGGAGCTGATCCACCAGGGATCCGAGCCCAGCTTTTGGACTCAGTGCTGGTGAGCTTCTTCATGTGTCTGTGAAATGGGGAAACATGAGCCTACTTTACGGCTAATGTGTGTAGAGCAGCTTTTACTAGCATAGTAGGTAATTGCATGAGTTTGTTTTATTTTGGAGTGATGTTAGTTTCAGACCAGGTATGATATATTTGAAGCTGGTCTGGAGCTCCTAGTCCTTCTGCCCCCACCTCTCAAATTCTGGGATTATAGGCATGAGCTATAATGCCTGACTTGTTAGTTCATTTTCTGCTGCTATGATAAAATAACTGAAGCTGGGTAACTTTATAAAGAATAGACTTTATTAAGAGGGAAGGTTTCATGGCATGGCTGAAGAATTGTCTCAGCTCTGAAAGGTTGGAGGCAAATGATAAATGATACCACATTATGTGGAAAGGGAGAGAACGTAAAGTGAGACAGGCGTGGCCAGGTGTGGCCAGGCACATGCTTTTATAACTTTTTTTTTTTTTAATTAACTCAGTCCCATGATACCTGCTAAAGCACCATGCCCCTGCCCTATGCCCCCTTAACATGGCTACACTGGGAATTGGTGACTCCTTAGAGACACACCAAGGTAGTGCTCAGTAGATAGAAGCTGTTCTAAGTGAGGTTACAGAGAAAGCCAGCTGGGTCAAGCGGCAGCCTCAAAGACAGAAGACAGCTTCAAAGACAGCTAGGTTTCAGTCTTGTCACCCACCCTCCTGGAATCACCTGTCCCTTATTCTCTGGAAAGAGGTCTTCTTACACTGGTCTAGGTCGCTGGACAGGGACCAGCATTCCCTGATGGGGTTCTTTGAGCCTGTGTTACTTACTGGTCGAAAGAATCCTCGGCAACTTGAGATTGTGCCAAGCTCTGCTGGTCTGGATTAGCCTCTCCAGGTCTATATATACCCAGACTCGAAGAAGCTGCTGCGATTTAGCCTAATTCCATAAGTGTGTGCTGAGCTCAACTTGTTCAAGGGATTGTGCTGAGGCATGTAAAGGGCAGAGACTCTTCCAGCTGATCCCAGAAGCCAGCTCCAGCCACAGCTCCTGGGAGCCACCATGTTGCAGAATAAAGTCTGCATTCAGCGTGGCTCTCAGAGCTCAGGGTCTTTCCAGCTCTCTGTCCTGCAGCATGGCTGCCAGAGTGCATACCATTCCCCATATCGTGTTCTGACTGCTTCATTACAACCGTTTTTAAAGGCCACACAGCCTTCAGCCATACAACTCTACTGTAGTTTATTTAGCCAGTCCCCTGTGAGTGGGCAGCCAGGGTGTTCCTGCCCTGGGCTCCGTGCAGGGGAGGCTTTAATACCCCCCTCCCCCCCACACACACACTGCCCTTCCCCCTGCTCTCAGCTTGTATATAGTGCTGCCACTTTTCAGAGCTGTGAGGGCAGGAGTGAGGCCACATTCCTTTCTTCTCCAGACCTTTGGCCATTTACTGACCACTCGGGTACACAGGTGCTTATAGTACTCCACCCCAAGTGCTGCCTCTGCCAGCTCCCCTTTGTAGGGGCTAAAGTGGGGTTGGAGCTGGTAAGAGTACGGATGCCCATTTTTCAGCTTTGTGCAGAGCTGTGGCTGGAAGGGCTGTCATGTTTCCATGGCAACAGATCTCCATAGTCTTGCTTTTACTGGCCTCCCAGTTTCAGCAGAGGGATGGACCCTGATACAGCCAGGCCCCTGCTGGTGGAATTTAAGTCAGCTGCAAAGGATGACTGGATGTCCACCCCTGGAAAGAGGGTTGGGACTCCTCCATGAAACTGGCGGTAGTAGCTGCTGTCAGTGATTTCTCAGATGAACCGGACACAGAGGAAAACGCTTGACCTCTGCTTCCCTAGGATACAATAACCTTAAGGGCAGCTAGAGTTATTTCTTATTTATCAAGAGGGAAGGAAACTGGGCCCCACAGAGAAATCAATATATTTCAAGAGGGAAGATTCCAACCCAAATATGCTGGTCTTAGGCTCCGAGTTTATGACCACCAAGGCTAGCAGTCACCTCCGAGAAGGAAATGCTGAGTTTACTTCTCAGGCCTTGTGCCAATGGCTGCCTGCCCTAGAGCTGAATTGAGGTTCACACCCAGAAGGTGATGGCTGCCATCAGGCCTCCCCTGCTGAGGCAGCACAAAGGGCCCTTTTGAAGGGCGAATCCAGGGGCACCCCTCCTGGCCTGTTCCTGATCCAAGCCTGCAGGGGGCCAGTGGGCACTTCTGGCCCTGCTGTTGAGCCAGAACTAGGCGGAATGGTTTGACATTCTTTCCTTAAACACATCACACTTGGTTGGGACACACAGTTTGTAGACTGATGTGGTACTGAAGCATGAAGCAGGTCTCCTAGCGCCACGGGGGACTCTTGACCACCACCCCCCCCCCCCCCGCCTCCTTTCCTGAACAGTCAAGCTTTATAAATGCATTGACTACCCTCCTCCCCACCCCTGATTTTGCACTTTGGATGAACCTTGTTTTCGAAGAAGTTAGAAGGTTGGTTTCCTGTGCTCACCAGCCGGCCTGTAATAGCAGAGTCAGGAGCACCACTGTAAAGTCCAGTGGAAGTAAACAGGAGAACATGGCTGACAAGCTGGATGGGAAGTGAATGCCAGGTGCCATCTACTTTCACACAGCAGCTTCTAAAACATTAGTGCTGAACAGTCCGTTTTTAATCACAGATTAGAAGCCGCTTTTCTTTTTCTTTATTGCTATGATTACCGTTATTTTTTAGATTTTGATGGTGATCTTCCAGTCCTTCTGTCCATGTGACTTTCCTTTGAAGGTCAAATCGCAGGCTGATAGGGATGGGGTATTAAGATCAGGGAAGTCACCTTGTAAGGAGTGGCTTTTCAGACCTGTGCAGTGTCTTCCTTTGCTTGGTGGGACGTCATGAACAAGGAGGCTGCCTGATGATCTTTGGCAAGTGATAGTGCCGAGGAGGTCTGGGCAGTCGCTCATAGGTCACTTGGTGTGGCCCACTCTGGGGAAAGGGACAAAACCACAACTGTTAAGGATGGGACACGTGTCTTTAAATAGACCTTCCTGATTTGTTTGTAGCAGTTTTCCTAAGAAGGTAGATGAGGTAAGCCAGTGGCCAGCTCTGCATCCCCTGCCCCCTTTGATATTGGATGTGGGGATGAGGAATATTGATCCTTTGCCAGTCTAAACTTGTCCTAATGTGAGCTCGGTGTGCCTGCAAAAGCCAGCCCAGCCAGTGATAAGATGCTGGATTGCCAGGAACCACATATTGCTAGCACCTCAGAACCTGTGGTCTTGAAGATGTCTCGTGGGTCCAAATTTGTTGCTGTCTCTGGCAGAGCATTGGCTATATTAGATGTCTAAGGCTAGCTGGGGTGTGTGTGTGTTTGTGTGTGTGTGTTTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCTAAGAAAGTGATTCTTGCCCTTGGTGACCTCCCAGAGTGCACCTCCTTTAGTAAGGATATGGTTCCATCCCTGTGGAGTTCTCTGCATTACACCTGAGGCTTTCCTAGTGCTGAGCCCGTTGCTTGTCTTTTTGTCTTTCCAG
Seq C2 exon
GCCGTTGACTACTTTTGGCCATTCCCAGAGGCCAGTCTGAGCAACTGATGGGGAGCTGTTTCTAGTGACCTCACTCTCCGGAATGCCCAGGTATCACTGTTAATCAAGTCTTCCCCGCTGAAGATGGCCTGTGCCCAGCCTGGGATGCAGCCCAGTTCCTGAGGTCCTTACCATGGTGATGATCCTAAGGAGAAGCCTCATCAACCAGGGAGCTGACTCTGGAGCACACAGGACCTTCATCCCTGAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030956-Fam53b:NM_175268:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.286
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF152421=FAM53=PU(43.9=96.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: