MmuINT0062944 @ mm10
Intron Retention
Gene
ENSMUSG00000024598 | Fbn2
Description
fibrillin 2 [Source:MGI Symbol;Acc:MGI:95490]
Coordinates
chr18:58200610-58203844:-
Coord C1 exon
chr18:58203746-58203844
Coord A exon
chr18:58200706-58203745
Coord C2 exon
chr18:58200610-58200705
Length
3040 bp
Sequences
Splice sites
5' ss Seq
CAAGTACGT
5' ss Score
8.4
3' ss Seq
TCTCTTGCTGTTCTTCACAGTTC
3' ss Score
9.3
Exon sequences
Seq C1 exon
CCATTTGCAGGAACAGTTGTGGAGATGGATTCTGTTCCCGCCCCAACATGTGTACTTGTTCCAGTGGACAAATATCCCCGACATGCGGAGCCAAATCAA
Seq A exon
GTACGTTCCCTCTCTGGGGCTATACTTGCCACATTTTTCTTAAACCCACGAACCAGTGACAAGTGTCCTCCTCAAAGAAGATAGGGATTGGTGATTGTTCTCACTCACCAGGACTTTGTTAAGTTTTGAACTAAGACCATCTTAGTGCCTCAGCTGTTGCCTAATCCTCAACAGAAACTGTGTGTAGGTAGTGGGACTGTTCAGAGTCCATGAAGTCATTCATCACAATAGCTGTAACTTCCTGAGCTTTTGGTACTCACACGGTTCTATGTGCAGCGTTTCAAGCCTCTCATCAACATTATTTGATACTGATGTGGACCCATTTTGCAGAGGAGGGAAGCGAGGCACATAATATATTAAATGACTACTGTCCTGCTTTGATGTCTAGTGCTATAATAAACATCATGACCAGAAGCGACTTGGGGGGGGGAGGATTTATTTTATCTTACACCTCCTAGGCAACCTTCTATCACCAAGGGAAGTCAGAATAGGGACTCAAGGCAGGAACCTGGAGTGAGAAACTGAAGTGCAGGCCATAGTGGAATGCTGCCGGCCAGCTTGCTCACATGGCTTTTCTATCTCTTTTCTTTACCACCTGGAACCATCTGCCTAGGTAGTAGAGCCCATCATGGGTTGGGCCCTTCCACATCAACAATTAATTAATCAAGAACATGCCCTGTAAGGTTTTCCCATGGACACAGTACCCCAGATGACTAGTTCGTATCAAATTGACAAAAAGCTAACCAGCTCATTTATGCAAGGCAACACAGACTTGAATCTACTGACTAAGAATGACTCGGCAGGGAGTCCCAAACACTAACCTGTATTTACTGCCTTTTGTGTACAGCCTCAATTTAGTCTTAGCTATGGGAAGAGAAGAAGATTAGAACAACAGATATTTACTGAAATACTGACCAACTACTTTATATGTACCAAGCCACTTTGCTACGCATACAAATTTTTAACAGTTCCATGAAGATAACTATAGCAGTAGACGAAAAGTGTATTTTTTTAATGATGCTTTCTGTTGAGACTCCCAAGTCCAAGACTGATTGTCTGTGTTAAGTGTTTAAGATCACACTAGATAAGACAGAAGTGACCCTAGGTAAGGCAGAAATGATATTGCTTCTTTAACTGCTCAATATCTAAACGAGGGCTTTAAATCTGCCTCTTAAAATGAGCATCGTAATAGTTCCCTCCACAAGTTTATGTTCCACAAGGGTGATATAGAGCATGTCTGATCCAGGAATAAGAGTCAAACAATGCACACCGGTGTGTGTGTGTACTCTGATGGACCATCGACAAGAGCCTCTGGGTCCACTGCTTCCAATAGTCTATGTTTTACCTGTGATTTGAAACTTAACGTCCAAACACACAAAGACTTTGAATGCCCTCAGGAGTGCACTTCCTCCTGCCCGGTTGTCTGCCAGAGACCTTTCCTCTGTGCCTTCATGATTTCTCGATTTGCTCACACCTACCCTTGGCACTACAACAAAGCATAAACCAGAGCAATACTGCTTTTTTTTTCCAACTTAATAATCTTGTTGATTATTTGGGGATTTCACACAATGCACCCTGGCCACATTCACTTAGCAGTCTTCCCAGACCTCCTCCCACCCTTGTGACCTCTCCTCAAGAATAAAAAAAAAAAATACAAAGTGCAATATTGCTTCTTAAAACCCAGACCTGAACAAGAAACACTATACAAGGTACTGGGTTATGTCTGGAACACACACACACACACACACACACACACACACACACGCACATACACACACTCATTTGGACTTTAGAGAACACCTACTTCCTTACCACCAGAAACTTTTCTAGCCCTTCCAACCTTCACCCTACTTGAACTTGCTAAAGCTTTTTTAGCAGTATTTATCACTAATTGCCTGAAACACTTTCTTGTGTGTTTGTGTGTGGGGGGTGTGTGTTCGAGCACATGACTGCACACTCATTTGGAGGCCACAAGTTAACCTAGGGCATCATTCCTCAGGTGCAGCTTATCTCTAAAGTGAGACTTAATTCATGGCTGACCACAGTCTCCATGTCTGCAGGTGCTTCAGCCTCGGCAGGTGGCCACGTCATCCACTCAGTGCTTACATGACTACAGCTTTCCTTTTTCCACTTTCCTTAAAGTAACTCCTTAAGTATGTGGGTTCTACTACACAATGTATTTCAACTCTACCATTTTACATTCTGTGCGGTTCGAACCATCCTCATCTTTCACCAGACTGCCTTGCACCTGACATCTTTCAATCCCTTCTCTACAGAGCAGTTTCTCCTTTAAAATCAAATATCTTCACTTTCATTGAAATCCTTTCCTTCTCTCTGCAACTGGAACAAACCAAGCCTTTGGTGGACAAGAAACCCACCTTACCTGACTGGCCTGGCCTGCCTCTCCAAGACACCGTCTATATCAGTTCTTTGGAGGAAACCCTAAAAGCATCCTAAGATCGTTAGAGGTTGAGTTGTTAACCCTAGAAGTGACTCCTTGCCTGACTGCTTCTCATCTTTCAAAGTTCAGTCCACACGTCACATAAAATTGGGGTTTTCCTGGGTTTTGTATCTACGTTCCTAACTGATTCGAGATAGTTCTCCTTTGTACCTGTCTTTCTCCAGGCAATTAATCACAATTTATCCGAACCTTGTATTCTAGACTTGAATTTTGTCTGTCTCCTTACTGATATGAAGGTTCCATGAGGACTAACCTTAAATCCATCACAGCAGCAGGTCCTGCTTTCTAAGTAAATATGAGTGTCACCTGTATGCTCTACACTATGCTACTAACAGCTTCTAGTGATTCCCTTTGACACTGTAGGTCATGTTAAATATATACTAAGTCACATGTCATAACAGGTATATGCACACATGTCAACTTAGTGACAAACAATAACTTGGTTGGATTATAACATTTGCATCAGTAGAATATATTTGCCATCAGATTGGACAAGTAGTTTGTAGATGTAATGTGCTTATTGTAGATGTAATGGCATTTGGTGACTGGTGCCTGTTTTTCTCTTGCTGTTCTTCACAG
Seq C2 exon
TTCAGCAGTGTAGCGTGAGGTGCATGAACGGCGGGACCTGTGCAGACGACCACTGTCAGTGCCAGAAGGGATACATCGGAACTTACTGTGGACAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024598:ENSMUST00000025497:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types