RnoINT0008416 @ rn6
Intron Retention
Gene
ENSRNOG00000052190 | AABR07072602.1
Description
NA
Coordinates
chr18:53263251-53266566:-
Coord C1 exon
chr18:53266468-53266566
Coord A exon
chr18:53263347-53266467
Coord C2 exon
chr18:53263251-53263346
Length
3121 bp
Sequences
Splice sites
5' ss Seq
CAAGTACGT
5' ss Score
8.4
3' ss Seq
TTTCTTGCTATTCTTCACAGTTC
3' ss Score
8.13
Exon sequences
Seq C1 exon
CCATTTGCAGGAACAGCTGTGGAGACGGATTCTGTTCCCGCCCCAACATGTGTACTTGTTCCAGCGGACAAATATCCCCGACCTGTGGAGCAAAATCAA
Seq A exon
GTACGTTCCCTCCCTGGGTCTCATTCTCCTTAAACTCGTGAAGCAGTGACAAGTGTCCTCCTCAAATAAGATACGGATTGGAATGGTTCTCCCTATCCAGGCCTTGGCTGAGTTTTGCACTAAGACCATCTTGGTGCCTCAATTGTCACCTAATCATCAAAGGAAATGTGTGTGGGTAGTGGGACGGTTAAGATTCCATGACGTAATTCTTCACAGTAGCTATAACTTCCCGTTACTCGCAAGGTTCTATGTGCGGTGTTGGCATGATTTCAAGCCTCTCGCCACCATTATTTGATATCGATAAGATCCTATTTTGCAGAGGAGGGAAGTGAGGCACATAATATATTTAATAACTACTGTCCTGCTTAGATGTCTAGTGCTGTGATAAACACCATGACCAGAAGCACTTTGGAGAGGAAAGGGGTGTTTTCTCTTACAACTCCCAGGCAACATTCTATCACCAAGGGAAGTCAGAGCAGGGACTCAAGGCAGGAACCCGGAGTCAGGAACTGAGGCACAGGCCAGGGCAGAATGCTGCCTACTGGCTTGCCTGCATGACTTTCCTAGCTTCATTCTTTACCACCTGGAGCCATCTGCCTAGGTAGTGTAGCTCATAGGGTTGGGCCCTTCCACATCAACAGTTAATTAAGAAGATGCCCTGTAAAGTTTCCCATGGGCAATCAGATGGACAGGGTATCCCCAGTTTGTGTCAGATTGACAAAAGAACCAGCTGACCCATCTAAGGTAACAGACTTGAATCTGCTGACTCAGGCTGACTCAGCAGGTAGCCACACAGTAGCCTGCATTTAGCGCCTTTGGTGTACAGTGTTGCAACCTCAGGCTAGTCTCAGCTATGGGAACAGAAGGCTATAAGAATGACAACAGATACTTAATAAAATACTGACTAAATACTTTATATATATTAAGCCATTTGTCACACATACTAATTTTCAACAATTTCATGAAGATAACTATAACGGAAGACTAAGAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGACTCTTTTTGTTGAGACTCTTAAGTCCAAGACTGACCTGTGTAAGGGTTTAAGATCACACTGGATAAGACAGAAAGAACACTAAGTAAAGCAGAAATGATATCGCTTATTTAACTGCTCAATATCTAAACGAGGGCCTTAAATCTGCCTTTTAAAATGAGTATGAAATTGTTACACCTTAATCGTTCCCTCCACGAGTTTCTTGCTCAGCAAGGGTGATGTAGAACCTGTCTCATCCAGGAGTAAGAGTCAAGCAATTACATGCCAGTGTGTTTGTCGTCTGATGGACCACTGACAAGAGCCTCTGGGTCCACCAATTTCAATAGTCTATGTTTTAATCAGTGATTTGAAACTTATCATCGAAACGCACTAAGACAGGTTGTCTGCCGGAGACCTTTCCTCCATGCCTTCATTGTCTAATTCTCGATTTGCTCACACCCACCCTTGGCAATACCACAAAATACAAACTAAAGAAATACCGCTTCTTTTTTTTTTTCAAAATAGTATTTTTGTTGATTATTTGGGGATTTCACACAATGCACCCTGATCACACTCACCTTCCTGTCCTCCCACCCTTGTGGAGGACACCCTTGTGACCTCCCCTCAAGAAAGAAGAAAAAAATACAAAGTGCAATATTGCTTCTTAATGCCGACCTGAACAAGGAACCCTATACATGGTACCGTGCTTAGTCTGGAATCCGCACACACTCATTAGAGAATACCCAATTCCTTTCCACCTGGAATTTTCTAACTCTTCCAACCTTCATCCTGTTCGAACTTGTTAGAGCTTTTTAGCAGTATATATATCACTAACTGCCTGAAACACTTTCTAGGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAGAGAGACAGAGACAGAGAGGAGACAAAGAGGAGACAGACAGAGAGGTGGGGGAGGGAAGAAGAGGAGAGGCCAGAAGTTAACCTAGGGTGTCATTCCTCAGGTACTGCCTACCTCCAAAGTGAAACTTTTAATTCATGACTGACCACACACAGTCTACATGTCTGCAGATGCTTCTGCCTCAGCACGTGGCCACATCTACCTAGTGCTTACACAACTATAGTTTTCCTTTTTCCATGTCACTCTTTAAATATGTGGGTTCTACTAGGCAGTGCATTTCAACTCCACCATTTTGCTTTCCGTGGGGTTCAAACCATCCTCATCTTTCATCAGGCTCCCTTGCACCTGGCATCTTTAAATCCCTTTTCTACAGGACAGTTCCTCTTTTAAAATCAAATATCTTCACTTTCTTTGATATATTTTCCTCCCATCTGCAATTGGAGCATGGTAAACCTTTGGCGGGCAAGGAGCCCCACCTTATCTGGCTGGCCTTGCCTGCCTCTCCAAGACACCTTCTACACCAGTTCTTTGGAGGAAACCCTAAAAGCATCCTAGGATCTTTAGAGTTTGTGTTCTTATCCTTCCAAAGTGACTCTTTGCCTGGCTGATTCTCATCTTTCCAAGACCAGTCCACATGTCGCATCAAAGTGGGCTTTTCCCGGTGGCTGTATCTAAGTTCTTAATTCAGTCTAGATAGTTCTCCTTTGTATTGTCTTTCTCCAGACAATTAATCACAATTTCTCCTAACCCTGTATTCTAACCTTGGGTTTGGTCTGTCTCCCAGTTGATATGAAGGTGCCGTGAGGCAGGCGAGAATTCTACCACTGAACCACCAATGCCACCTGAAGGCGCCATGAGGACTGACCTAAAATCCATGCCAGCATCAGGCCCATGGTCCTGCTCTCTAAGTAGATACTAGTCTCCCATATGCCCGGAACTATGCTACTAACAGCTTCTAGTGATTTCCTTTGACACTGTAGTTTATTTTAAATATATACTAAGTCACATGTCCTAACGGGTATAGGCACATGTGTGGACTCAGTGAAGGAATAACTTGGTTGGATTGTTTGCATTAGTAGAGTGCATTTGCCATCAGATTGGACAGGTAGTTTATTGATGTATGTGCTCATGGATGTAATTTGGTGACTGGTGCCTCTCTTTTTCTTGCTATTCTTCACAG
Seq C2 exon
TTCAGCAGTGTAGTGTGAGGTGCATGAACGGTGGGACCTGTGCGGATGACCACTGTCAGTGCCAGAAGGGATACATCGGGACCTACTGTGGACAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052190:ENSRNOT00000087290:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]