MmuINT0063068 @ mm9
Intron Retention
Gene
ENSMUSG00000030811 | Fbxl19
Description
F-box and leucine-rich repeat protein 19 [Source:MGI Symbol;Acc:MGI:3039600]
Coordinates
chr7:134890289-134891964:+
Coord C1 exon
chr7:134890289-134890651
Coord A exon
chr7:134890652-134891763
Coord C2 exon
chr7:134891764-134891964
Length
1112 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
TACCAACCATCTGCCTACAGCCC
3' ss Score
6.89
Exon sequences
Seq C1 exon
GGGTGGGGAGCTGAGACTCATACCCGGGACTGAGTGGGGCCCGGGCAAAAGCTGAGCACCCTGCGCCCGAGGAGCCCCCGTTGGCCTGGGGGGGCTGAGGGACTGAGCCCCCCAGAGCAGGACCTCCCCCTGGAAGGGCCGCGCCGCAGCCCGTGGGAGGGCCTCGCCCCCGGCGCTCCCCATCTCCACTCGCTGCTGTCCCGGCCTCCGCCGGAGGGAGGGGCCGAGCGCCCTCGGGGGGCCGTGGACCCCGGCGTTCTGAGCGTTCAGCGCCCCGCGCCGCCCGGCCCCCCCGCCGCCGATGGCCGCCGACCCGCCGGGAGCTGCCGAGAAGGGAGAGATGGCTCCCGGGACACGTGTGAG
Seq A exon
GTGGGTTCATGCGGCTCCTCCTCACCCCCAGACCTGGGCAGCTCCCACTCCCATTCATCCTCAGCCTGGCCTCTCCCTTCCTTCCCCGCCCCCAGCCTCACCCTCCCTTTGCTCCAAACTCCTTCTCCAACCTTCTCTCCTATAACCTCCAACCCCAGGGAAGTGGCCTTCCTTCCCCGACCCTGCTGCCCCTTGCAGACCTCCCCCTCCACCCCGCCTCCAGTCGCCGCCCTCTAGGCCCCTCCCCCGGAGTGCTGGAGGGCCCCATACCCTGTGGATGGTCTGGAAGTCCTTGGAAAGGGAGAAGCCTGGGGGAAGCAGGTCTAAGACTGATTGGGAAGAGACCCCCCCAGGCTTGCTGAGTCCATGTGGGATTTCAGAGGATCTGGTTTCCAGGGGCAGGAGAGCCCCAGGGATTCCAGACAATTAGGGATGAAAAGCAGGCTGGTAAGATGTGAATGGGGGCGGGAAGACCTAAAGCCGAGCCCACCTTGAATTTTGTTGAGATGTTAGGGCAACTTGTAGAATCCTAGGGAGTCTGGGAGATTACCCAGATTGCCTGAGGGATCCTATTGGATAATTTGGAGCCCCCAAGGACTTGTGTGTGGGCTGAGAGGGGACACTAAGCATTTCAGGGGTGTCAGCCCGGGGAAGTGGAGAGCACACACTGGGTCACTAGAAATGGAGTGGGTCTGGCTAGAGTACCAAGGTTTGAAAGGTTTGGATGACTAAGTACCCACGTGAGAGAAGGGAGAGGGGAAAGAGTGTGGTGCATGCCCCTGGAATCTGGAGGTAAATCAGTGAGGGAATGGGGGGTGTGGGTAACAACAGGTATGAGTTGAAGCTCCCTCAGGTAATGCTACAGATCTGAAGCCTTTTCCAGGAACCTGGGCTTGGGATGTTAGAGGAGGGGCCTCAGTGTCCCTCCTTCCAGCAGGCGGGAGGTCTTGAGGGAGTGGCCCTCTGCTCAGGACACACACTAAAAGGCTGACCTTCTCTGAGGGTAGAAACAGAAGCTCTGCCCCCATCAGAGGTGTAGTGAGCTTGCGGCCAGGAGACTCTCAGGCCAGGCTTTGCAGGCCTCTCTGACCTTACCAACCATCTGCCTACAG
Seq C2 exon
CCCTCGGCGTTGCTGACGCCCCCAATGTCGTCGAGCAGCCGGGGACCGGGGGCCGGAGCGCGCCGACGCCGAACCCGCTGCCGTCGTTGCCGGGCCTGTGTGCGAACTGAGTGCGGGGACTGCCATTTCTGCCGAGACATGAAGAAGTTCGGGGGGCCCGGGCGCATGAAGCAGTCGTGCCTGCTTCGGCAGTGCACCGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030811-Fbxl19:NM_172748:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.153
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0200815=zf-CXXC=WD(100=79.7),PF0013017=C1_1=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCCATCTCCACTCGCTG
R:
CCCCGAACTTCTTCATGTCTCG
Band lengths:
342-1454
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: