BtaINT0061286 @ bosTau6
Intron Retention
Gene
ENSBTAG00000040555 | FBXL19
Description
F-box and leucine-rich repeat protein 19 [Source:HGNC Symbol;Acc:HGNC:25300]
Coordinates
chr25:27322441-27323670:+
Coord C1 exon
chr25:27322441-27322476
Coord A exon
chr25:27322477-27323469
Coord C2 exon
chr25:27323470-27323670
Length
993 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
3' ss Seq
TTTCCACCCTCCACTCATAGCCC
3' ss Score
8.49
Exon sequences
Seq C1 exon
TCCCCCATGGATGGGTCTGGAAAGGGGGAAGCTGGG
Seq A exon
GTAAGACTCTGGATATGTAGCGAGCCTCCAGGCCTGCTGAATCTGTGCGGGATCTTGGAGGATCTGGTTTGCCTGGGAAGAGGAGCCCAAGGGATTCCAGACAATTAGGGATGGAAAGCAGCTTGGGAAGCTGGGAGGCAGGGGGCGGTGCACACGAGCCCATCTTGAGTTCTATGGAGATGTCAGGCTGGATTCTAGATTCCCAGGGAATCTGGGAGATTGCCCTGGTTGACCTGAGAGACCCATAAGGAGGCTGTGTTGGAGCAGAGGGAGCTCTGTGGGGAACAGAGTTGAAATTTGGGGCCACGGAGGGCTTCTGAAGCAGCATCTGAAAGAAGGTCTGTGAGTGCTGGGAAGTTGGGCAGCCCGGTGGATCTTTAGGGGTTAGATTGGGTGAGCAGGTTCCCATGAAGATGAGGAGGAAATCTAGGCTTTAGAGGAGAGGAATTGGGTGTTAGTAGCTTTTGAGAGAAAAGAGAGAGGTCTGGAGTTGGCAATCAGGAATCTGTGGGGATCTGGGAGGTGAATTTGGGGTGTTTCAGCTTGGGGAGAGCCGGGGATGGAGCACATTTGGAGAACAGGGGAAGAGTTGGGACCTGTCTCAGGTGACTCCACAGACAAGGAGCCCCTGGTTTTCCAGGGAGCTTCGCTGTGGGGATGTTGGTGGAAAGGTCCTTGTCCCTCTCGGTGTGCCTTCATCCTCCCTGGGTCAGGCGCGGGAGTCTGGAAGAAGTGTTAGAGTAGGAGTGAGGTCAGGAAGCTAGTTCTCAGGGCTCCCGGAGGAGCCAGGTGAGCTGCTTCAGGAAGAGGGTGGCCTTGCCTAGAGGGATGGGGGTTCCCCTGACCCCCCGCAGGAGGGGCACCTCCTTGTTCCTTGTCTCCCTGGGTAGGAGGGCAAGCTCTGGCTGCCTAGAAGTAGGGGGAAAGCTGCCAGGAGTCTCGCCGGCCAGGGTCCCCGTGGACCCCCCTGACCTTTCCACCCTCCACTCATAG
Seq C2 exon
CCCTCGGCGTTGCTGACGCCCCCAATGTCGTCGAGCAGCCGGGGGCCGGGGGCCGGAGCGCGCCGACGCCGAACCCGCTGCCGCCGCTGCCGGGCCTGTGTGCGAACTGAGTGCGGGGACTGCCACTTCTGCCGAGACATGAAGAAATTCGGGGGGCCCGGGCGCATGAAGCAGTCGTGCCTGCTGCGGCAGTGCACTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040555:ENSBTAT00000056997:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.284
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0200815=zf-CXXC=WD(100=70.1),PF0013017=C1_1=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGGATGGGTCTGGAAAGG
R:
AGGCACGACTGCTTCATGC
Band lengths:
214-1207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]