MmuINT1010161 @ mm10
Intron Retention
Gene
ENSMUSG00000030811 | Fbxl19
Description
F-box and leucine-rich repeat protein 19 [Source:MGI Symbol;Acc:MGI:3039600]
Coordinates
chr7:127745201-127748450:+
Coord C1 exon
chr7:127745201-127745332
Coord A exon
chr7:127745333-127748249
Coord C2 exon
chr7:127748250-127748450
Length
2917 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCG
5' ss Score
10.05
3' ss Seq
TACCAACCATCTGCCTACAGCCC
3' ss Score
6.89
Exon sequences
Seq C1 exon
GAAAAGGAGGCCAAGAGCAAAGAGACTTTCCGTTTCCGTCCGCTAGCAATTTGGCGTGTTCACGGTGATACATATTTCAACAGTAGCGTCCTTTCTCTGTACAACTAAAGCAGAGACTACATAACCCACCAG
Seq A exon
GTACCGGCACCGAGGGGCAAGCGACTAGGTTGCCATCTCTGTAGTAGTCCTCTCCTACACATCCGCCGAGAATAGTATTAGCGGTTGGACTACAAATCCCATAGCATCATGTGCTCCTTCACCCTCCATCTTTGTGGTAGTCCCCGCCCCGCTCACTTCCATTGTCTCGACAGAAGATAAAGAGGGGAGCGAGGAAGACTACAATTCCCGTCTGGCTTTGCATCATCGAGTGCGGGATTTTGATAGTTCAGGCGGGCGAGGAGCTCCAAGTGGTAGAATGAAGCAGCCAGGAAAGGTTAGGTATCCTGCCATCTTTACGGTAGTCTCTTTATCCTCCCGGTTCTGGCATTCTTAAAGGAACATAGGAAGGCTAGAAAACTACTATTCCCATCCCACTTCATAAGATCGACTTATTAGGTGTACGCCCCTCGATCGCCATCTTGCTTGTAGTCCTCGTTTCTTTTCACCTTTCCATTGTTCCTGATGAGTAGAAATGGCAGCGGGAAGGCAGCAGCTGGACTGCGACTCCCGTCAGGTACCACACGCGCGGAGGGTTGTGGACCAGAGGGCGTGTGAGTGCCTGGAAAGGAGGTCGGGTCGGGGGAAAAGGCCATCTTGCTTGTAGTCATTCTTCCCGCTCCTTCTCTATGTCCTGCTACGGGGAGTCTCGGGTCAACTGGACTATAATTCCCGCCATGCTCGGCTTCCAGCGTGGCATCCTTCTCGCCATCGTATTTGTAGTACCGGCTGGCCCTTGTGTCCCACTTTTCCCACGATAGTGCTAGAATTTGGAGAACTACAACTCCCGTCGTGCTTTGCACGCGCTCGTCCTGGAAAGTAAAGGTGGTGAAGGAAGGAGGGAGAAGGGGGCGGGGTTCCTCTGGGAGAAGGAGGGAGTAAAAAGGAGGAGGAGGTGGGAAGAAGGGAGGGAAGAGGGAGGAGAGGAGGAAGGAGGAAGGAGCTGAGGAGGGATGAGAGCGGCGACCTGGGCCCAGGGCCGAAGCAGCGCGAGGCTAGGGGAGTAGGGGTGCTAAGACATCCCAACTGCCCCCACCCCCTTCCTGCCTCTGCCCCATCCTTTCCTTATACCCTCCCATTTTAGGAGTGGATTTATTCAAATTTTATTTAAATCTTTATATCTTGAGGGTCGCGCGTTTGAAGGGGGGAGGGCGGGGGCGCGTGCAGGCTGGGGGGGGCGGGGCCGGAGCAGCTTCCTTCACCCCCCTCTGCGCGCCCTGTCTCTGTAGGTCAGGGGGCCGCAGTACAGGGGCGGACCCAGGGGAGGGGGGCAGGTTGCAGCGACCCCCCCCTCCCCGGGAACCGGCGGTGGGCGGGGTTTGAACCCCGGAAACGGTGGGGGGCCCCTGGTCTTTCCCTGGACCCCTGGGCAGTTGGAGCTGGGAAGGGGCCAGTTAAGGGTCGGGGGCTTTGGGGAAAGGTGGGGGTGGGGAGCTGAGACTCATACCCGGGACTGAGTGGGGCCCGGGCAAAAGCTGAGCACCCTGCGCCCGAGGAGCCCCCGTTGGCCTGGGGGGGCTGAGGGACTGAGCCCCCCAGAGCAGGACCTCCCCCTGGAAGGGCCGCGCCGCAGCCCGTGGGAGGGCCTCGCCCCCGGCGCTCCCCATCTCCACTCGCTGCTGTCCCGGCCTCCGCCGGAGGGAGGGGCCGAGCGCCCTCGGGGGGCCGTGGACCCCGGCGTTCTGAGCGTTCAGCGCCCCGCGCCGCCCGGCCCCCCCGCCGCCGATGGCCGCCGACCCGCCGGGAGCTGCCGAGAAGGGAGAGATGGCTCCCGGGACACGTGTGAGGTGGGTTCATGCGGCTCCTCCTCACCCCCAGACCTGGGCAGCTCCCACTCCCATTCATCCTCAGCCTGGCCTCTCCCTTCCTTCCCCGCCCCCAGCCTCACCCTCCCTTTGCTCCAAACTCCTTCTCCAACCTTCTCTCCTATAACCTCCAACCCCAGGGAAGTGGCCTTCCTTCCCCGACCCTGCTGCCCCTTGCAGACCTCCCCCTCCACCCCGCCTCCAGTCGCCGCCCTCTAGGCCCCTCCCCCGGAGTGCTGGAGGGCCCCATACCCTGTGGATGGTCTGGAAGTCCTTGGAAAGGGAGAAGCCTGGGGGAAGCAGGTCTAAGACTGATTGGGAAGAGACCCCCCCAGGCTTGCTGAGTCCATGTGGGATTTCAGAGGATCTGGTTTCCAGGGGCAGGAGAGCCCCAGGGATTCCAGACAATTAGGGATGAAAAGCAGGCTGGTAAGATGTGAATGGGGGCGGGAAGACCTAAAGCCGAGCCCACCTTGAATTTTGTTGAGATGTTAGGGCAACTTGTAGAATCCTAGGGAGTCTGGGAGATTACCCAGATTGCCTGAGGGATCCTATTGGATAATTTGGAGCCCCCAAGGACTTGTGTGTGGGCTGAGAGGGGACACTAAGCATTTCAGGGGTGTCAGCCCGGGGAAGTGGAGAGCACACACTGGGTCACTAGAAATGGAGTGGGTCTGGCTAGAGTACCAAGGTTTGAAAGGTTTGGATGACTAAGTACCCACGTGAGAGAAGGGAGAGGGGAAAGAGTGTGGTGCATGCCCCTGGAATCTGGAGGTAAATCAGTGAGGGAATGGGGGGTGTGGGTAACAACAGGTATGAGTTGAAGCTCCCTCAGGTAATGCTACAGATCTGAAGCCTTTTCCAGGAACCTGGGCTTGGGATGTTAGAGGAGGGGCCTCAGTGTCCCTCCTTCCAGCAGGCGGGAGGTCTTGAGGGAGTGGCCCTCTGCTCAGGACACACACTAAAAGGCTGACCTTCTCTGAGGGTAGAAACAGAAGCTCTGCCCCCATCAGAGGTGTAGTGAGCTTGCGGCCAGGAGACTCTCAGGCCAGGCTTTGCAGGCCTCTCTGACCTTACCAACCATCTGCCTACAG
Seq C2 exon
CCCTCGGCGTTGCTGACGCCCCCAATGTCGTCGAGCAGCCGGGGACCGGGGGCCGGAGCGCGCCGACGCCGAACCCGCTGCCGTCGTTGCCGGGCCTGTGTGCGAACTGAGTGCGGGGACTGCCATTTCTGCCGAGACATGAAGAAGTTCGGGGGGCCCGGGCGCATGAAGCAGTCGTGCCTGCTTCGGCAGTGCACCGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030811:ENSMUST00000186207:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.163
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0200815=zf-CXXC=WD(100=79.7),PF0013017=C1_1=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types