MmuINT0063423 @ mm9
Intron Retention
Gene
ENSMUSG00000090173 | Fbxw10
Description
F-box and WD-40 domain protein 10 [Source:MGI Symbol;Acc:MGI:3052463]
Coordinates
chr11:62682514-62687031:+
Coord C1 exon
chr11:62682514-62682656
Coord A exon
chr11:62682657-62686872
Coord C2 exon
chr11:62686873-62687031
Length
4216 bp
Sequences
Splice sites
5' ss Seq
TAAGTAGGT
5' ss Score
4.16
3' ss Seq
GGTGTTGTCTTCCCTTCTAGGGA
3' ss Score
10.62
Exon sequences
Seq C1 exon
ACTCTCACTGGGCACGAGGGAGCTGTGAAGTGCCTGTTCTTTAACGAATGGCATCTCGTCTCTGGAGGTGCTGACGGCCTGGTCATGGCCTGGAGCATGGTGGGAAAGTACGAACGGTGCCTGATGGCCTTCAAGCATCCTAA
Seq A exon
GTAGGTGCTGGGGAGTGGGGTGGTACATGTGCAGTCTTCAGTGGATCGGTCCCTCTGTGTGCTGCTGCTCTAGTGGGGTGGAGTGAGAGAGTAGGTCTCCCTGTGTAGCCCAGGCTGGCTTGGAACTTGTGATCTTGCTTCAGCCTACCGAGTGCTGAGATTAAAAAAAACATGTGACACACAATAAGCTCACATCTGTTAGCTATCTGGTGCACCGGCAGATTGTCCCAAATAATGCCAACTCTAAACTTAGTATTCTGGAACGTGGTCTTTATGCCAGGGAAATGTGCTTGCAAAACCTTAAAATGATCCACATGTCAAAGCCTAAAAATAACAAAAGACATTTGAAAAGTTTATACTTCAAAGTTTATGGACTAGGTCCTGTTCCAGGCCTGCAAATGGGTTTCATTTTTCGATGCCAGTCCAGATTTAGTGCTGATGGCTGCTTGGTGCCTATTAAGTATTCTGAAGTCACAGCTGGGCTCACTTGGAAGGGCTATTGGGGCCAATTAATGATTCTGCTGGGCCTATGGTTTTACAGACTACACAGATAATGCTTCTAACCCCCAGTGCATTAAAGTGCCAAGATGCTATATTACTTAACTAAAAGAGTCAGTGGACTCCTTAGGGGAATCTATCTGAGGATAGTCATTTAATAAGTCAGGTTCTAGATTTCTGGACACTCTGTACACCCCAGCCTTGTGGGAGGCACGTGGTATAAGATATAAGATGTGTGTATACATCTGAATGCTCTTTGTGGCACATGATAACTACATTACTAGCAGGTGGATACTAAGAACTGCCTGTGCTCAGTGGATTTACCAAATCCCTGGGAACCTGCGGGGAAGCCTTTCAGTGTAGCACCTGGACAATCAAGCTGTGACCTCAACAAGGGAGTCAGCTTTAAGATGGTCCCTGAAAAGTATTAACTGTATGTTTTTAAATCTTTCACCCGCTAAGACTTGGCTACCGGAATAACGTTTCAGCCAACCTCACAGTTTGTTATCTCATTAATCCATGGGCCTTCTGTCTGCTAGCAGACAACTTCAGATACTGCCACTCTCCATGGATGTCTCACCACCAACGAACAATTCATCTTTTGCTATTTACAGACTTTTACATTCTATTTACTCACTTTATTTTATGTGCGACTGTTTTGCCTGCATGTAAGCATGGGCAGCATGTGCGTGCTTGGTTCCTGTGGGGGTCAGAAGAGGGTGGTGGAGCTTCTGGAACTGGAGTTCCAGGTGTTTGTAAACCATGAGGTTTGTGCTGGGAACCATGCCCCATCCTCTGAAGGAGCAACCAGTGCTGATGGATCATTGAGCCATCTCTCCAGCCTCAGATTGGTTCTTGATATCTAGCAGGGACACAGAAAGACCATAACTACCTGGAGGATATAGCTAAGGCCTTGTGTGCATGCTCCTCCACCCTTCTGTAATGGTGAGAGCTAGGCATAAGCTGCGCAAAGCTATTAGATTGGCAGCAAGCATTTCTTTATAGAGTGCTTTTTTGAAGGAGTCTAGTGATTGAATTGATAATTCATCTTTTGAATATGGTAGACGGTTGCTATCTGAAAGAGGAACTAGAGAAAGGAAACTCCTTCAATTCCACGTTTTCAATGAAAATTGTGATTTTTGAATTATAGTGTGGGAAGGTTATGAGAGAAGTCTGAGCATGAAAAGTTGGGTTGACAGATGGCGATCTTATACTCTGGATTTTTTTTCTTTAAAAATAATCTTCAATGTCTTTCCCACAATGCACACCATAATTAACTTTTTTTTTTAATAATTGAGACATAGCTTCCATGATATAAAATCCACTTCACTAGTCTATAGCAGTTTATAGTATATTCAAGATGTTGTACATTACCTACCTATAGAATTCCCATCCATCAGCAGAGATGTTCCCTAGTTCCTTCCTTCTCTCTTGAACCTTCTCTCTTGTTCTACTTCTTTTTCAGTGCTAGGAATTGAACTCGGGGCCTCCCAGCCTAGGCAAGCAGCCCGAGCCACACCCAGGACAGTTCCCCTCGTATTTTCTTGGCCAATTTTAGTAAAGACTTGTTGCGTGTCTATCAAGCTTTGTTGATCTTTTCAAAGGATTAACTTTTTTGCTCCATTGATTTGCTGGATTTTTAAAAAATTAACCCAATTAACTTATGCTATAGTTCTTATTATTTCTTGTCTTCTGCTCCATTTGGTGGTGGTGGTGGGGTTGTTTGTTTTTTTCTTCTAGTGGTAAGGTAAAACAGTTGGTAACCAGTTGGAGTAATGTGCATGTTAGTGCTTTCGCTGCTTTGTTTCCACAGGTGGGTATGGTTATAAAAGCCCAAGCTGGCAGTCTCCTGCTTCATCCTCCTTAGTGTGCTGTATTTCCATTTCCATTTTTATCTTGGACCTTTCCTAAGCAGGAGCTCTGGACACATGTGGACATCAGATTTCCAGAAACACGCTCCTGGATCTCTCACTCCCCAGCATTTTCCTGACTTTTTAGCTAGTGTATCATTTGCCCTACTGCATTTCTAGGACCTCAGGTAGCAAGAGCTCAATTATCTACCTGTGACCATCGCTGGCAAACGCCCCTCAGGTAGCAGATCCAGCACTGAAAGAGTTCTTAGGTAACAAAGATAAGCCTTTAAGAAGCTACTAGACAGCACCTTAACTCCTCATGATCGCAGCCAGTTCAGTTCTTACACCAAGACTGTGGCTACTTCTCTCATGGCTATATCTGTAGTGAAGAATGGACTAGGGTCAGTTAACATGTCACAAAACATGGCATTCTTATCAGCTCTAAGGCCACTTTTCCTGTCTCAATGCTTCTTGGGATACCACAAGTCTTCTGTAGTTTTCCAGGATTCTAAAGAAAAAGTAGATTCTGACAGGTTTTTTTGTTTTGTTTTCTTTTGTTGCTGTTATAGAAAGGTGGAATTTTGTATAGTTTAGAATAGAGTTCATTTAGGGCATGGGGAGGGGAGTCAAGGGGTAGTAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAGGCCAGCCATGAGCACATGGAGAAAGAGGGGGGAAGGGAATGGGGAATGGAGAAGGGAAAGCAAAAACAAGAGAAAGCAAGAAAGCAAGAAATCGAGGAGGGGGCAAATAGCCCCTTTTATAGTGGTCCAGGCATATCTGGCTATTGCCAGGTAACTGTGGGGCGGAGCTTAGCCAGAATGCTAACAATGACTAATAGGCTTGCTTTGCATGTGACATCTAATAAGTTGATGTGATTAAATTCAATTTTTCAAGGACACCAATAAAAAAAGGCATTGTAATGATCAGAATTGAATAAACCAACTTGATCCCTGTATTTGGAGAAAGATTCTTTTGGCGCATCTATCTGAGGTTTTCCCTGGCTCCCTCCTTGCCCACTGGCCATCACACAAAGGCACAAGTCTCATGTCAAGGTATAATTTTCTTTAAGGATGTTCACTGTCAGAAGGAACAGAAGTCATTCATTAAAGACCAAAAAGAGAATCTATAAATTTAAGATGTCTGTTCATATAAAAGTAATCCTTGAACCATACAGTGGAGGTGCACGCCTTTAATCCCAGCACTCAGGAGGTAGAAGTAGGTGGATCTTTGTGAGTTTGAGGCCAGCCTACTCTACGGAGTGAGTTCCAGGACAGCTGGGGCTATTCAGAGAAATCTTGTCTTGAAAAACTAAAATGATTGATGATGATGACGATGATGACGATCCTTAGCTTATACTGTTCTTTCTTATATAACAAGACTGTTATACAAGAAACAGTTCTACAAGGAATAAAAAGAAAAAAAACTCAATTCTCAGCATAAATAAGTAGCTAAGAATCAAAATGCATGAAAAAAATAAATGGCCCTGTGATGTATTAGGCGTCTCTCCCCAACTACCTCTTAAAAGCCAGAAGCAGCACCTTTGTCCCCTGCGACCTGCGATTAAACCGTGAATAACTTACAGAATGGGAGTGGTATGTCTGATGGATGGTACATGATTTAAATCTAGAATTATAAAGGCTGGAAACTCTACCTCAAGGTCAGGGGTGGCTCCTACCTCCCAACCCCACCCGAATGCTCGAATCTGTTTCCACCTGGCAGGTGTTGTCTTCCCTTCTAG
Seq C2 exon
GGAGGTGCTGCAGGTGTCTCTCCTCTACCTCCGGGTCATCAGTGCCTGTGGAGACGGCAAGATCCGAATTTATAATTTCCTCAATGGGAACTGTCTGAAGGTGATAAAAGTCGACGCCAGAGGTGACCCCGTGCTATCCTTCTTTTATCAGGGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000090173-Fbxw10:NM_001033669:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(83.8=64.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: