GgaINT0128993 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:2199066-2200089:+
Coord C1 exon
chr18:2199066-2199208
Coord A exon
chr18:2199209-2199933
Coord C2 exon
chr18:2199934-2200089
Length
725 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
ACTGCATGTTGTGTTTTCAGGGA
3' ss Score
9.53
Exon sequences
Seq C1 exon
GTACTAGAAGGGCACCTAGGCCCAGTGAGGTGCTTGTCCTTTGATCAGTGGCACCTCGTCTCAGGAAGCAGTGATGGATATGCCTTTGGATGGAGCATGGTGGGAGACCTTAAGAGGTGCCTAACAGCTTTCCGTCACCCGAA
Seq A exon
GTAAGTGGCAGTGTGTTTCAAGGTGTATTCTAAAGCCTGCTGTAAAAAGGAAAAAAAAAACAGCCCTCCTTACAGGAACACAAAATATCTTATAATGGTCAGTGCTAGAATGTGAAATATCCTCTTCCAACAGTTCTCCACCTAAAAAGTGTCAGGCAACACGTGGTCATAGACAGCATTTGTCAGCTGTGAAGATCTGTAACAACCTAAAATACAAATACACAGCTGCTGGCTCACAGACAGGAGTGTCTGAAGACAGACATTGCAAAATGTCAAGGATCCCAGCCTTCATTCAATTGGGTGCCATGCAACTTGGTCGAGAGTTGACACTGTGTATGTTCATGGTGGCTGCATTGCATGCTGAACCCTACCAACTGCATGTTAGATCAACTTGTAGTACTTGCTTATTAGAACTACGAGAACCGTAGCATCTTATTGCTCCAGACACAAAAATAAAATGTTAAACGTGGCAGATAGCTGCAATCACTTACTCTGAGGATGAGCATCAGCTTTGTGTGCTGGCCATGGTCACTTTGGTGATCTTCACAGGACTTGTTATGAAGAACTTCTGCAGGTCTTCTAAATATCTTGATTGCTCCTGCTGTGTTTTTTAAGCCTGGTGGTAGAGGCAGGCCATTGCATCCCTTGCAAAACAAGAGGCAGTTGATCCTGTCTCCATGTGAAGGCATGGCGACTGCACCAGTGACTGCATGTTGTGTTTTCAG
Seq C2 exon
GGAAGTTCTGTCTCTGGAGTTGCTCTTTCTCAGAGTCGTCAGCGGCTGTGCTGATGGGAAGATCCGTGTGTTCAACTACCTGACTGGGAGCTGCCTGAGAGTGCTGGTGGGCAGCAGCAGGGGGGACCCCATATCTTTCTGTGCTGCCAAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001323:ENSGALT00000002016:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(83.8=64.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTAGGCCCAGTGAGGTG
R:
TGTTTTTGGCAGCACAGAAAGA
Band lengths:
286-1011
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]