HsaINT0063002 @ hg19
Intron Retention
Gene
ENSG00000171931 | FBXW10
Description
F-box and WD repeat domain containing 10 [Source:HGNC Symbol;Acc:1211]
Coordinates
chr17:18671847-18673398:+
Coord C1 exon
chr17:18671847-18671989
Coord A exon
chr17:18671990-18673239
Coord C2 exon
chr17:18673240-18673398
Length
1250 bp
Sequences
Splice sites
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
3' ss Seq
GCTACTCTGTTCCCTTCCAGGGA
3' ss Score
9.77
Exon sequences
Seq C1 exon
ACTCTCAGTGGCCATGAGGGAGCCGTGAAATGCCTGTTCTTTGACCAGTGGCATCTCCTCTCAGGAAGTACTGATGGCCTGGTCATGGCCTGGAGCATGGTGGGGAAGTACGAGCGCTGCCTGATGGCCTTCAAGCATCCCAA
Seq A exon
GTAGGTGCCTGTGAAGCCCGGAGCGATGAACCTGGTGTCCTTCCCTTCCCCGTCATAGCCTAGACTGCAATCATTGGCAGACCTTCTGCTCCCTGTAGACATCGTGTTCTCTGCACCTCACCCTCTCTGCTTCCCTCCTCTTCCACCTGGGACCCATTTTTCCCCACCATCTTCTCTGTCTGACTGTTAACCTCTTCTACTCTCCCTTGTTTTCTTGTGAAGTAACTATAGAAACTGGGGGTTTTGAGAAGTTATTGATTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTCGCTCTGTTGCCAGGCTGGAGTGCAGTGGCGCAATCTTGGCTCACTGCAAGCTCTACCTCCTGGGTTCACGCTATTCTCCTGTCTCAGCTTTCTAAGTAGCTGGGACTACAGGCGCCCACCACCACACCCAGCTAATTTTTTGTATTTTTAGTAGAGATGGGGTTTCACGGTGTTAGCCAGGATGGTCTTAATCTCCTGACCTCATGATCCACCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCTTGCCCAGCCAATAATACTATTTTAGAAAGAATCAAAACATTAAATAATTCTCAGCATGACTATTGTATAAGTAAACGCTAGGAATCAAATTGCAAGAGACAAACATGATCATCTATATGTTAGATAAAAAAAAGATTGTGACATCAGCCTTTTTGTTTTGTCATCTTGTGGCCCTGTGACCTAATTGCGGGGAAAGTAGCTGCAGAATGGGAAGAGGTATGTCTTGAGAGAAGCTCACGGTTTACTTCCACAATTATAAAATGACAGCAGGCCGGGCATGGTGGCGCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTAGGTGGATCACCTGAGGTCAGGATTTCATGACCAGCCTGACTAACATGGTGAAACCCCGTCTCTACTAAATACAAAAAAATTAGCCAGGTGTGGTGGCGCATCACTGTAATCCCAGCTACTTGGGAGACTGAGACAGGAGAATCGCTTGTATCTGGTAGGTGGGGGTTGCAGTGAGCCAAGATCGCACCGTTGCACTCCAGCCTGGGCAACAAGAGTGAAACTCCATCTCAAAAAAAAAAAAAAAAAGACAGCAAACACCATTTTGAGGCCAGTTATGGCCAGTGCTGCTCAATCACACACAAAATGCTCCCAACCTACAAACAAACCCAGGCATTTTACGAGAGGATGGGTACTGCCTGCTACTCTGTTCCCTTCCAG
Seq C2 exon
GGAGGTGCTCGACGTGTCCCTTCTCTTCCTCCGGGTCATCAGCGCCTGTGCAGATGGCAAGATCCGAATTTACAATTTCCTCAACGGGAACTGTATGAAGGTGTTAAAAGCCAATGGCAGAGGTGATCCTGTGCTGTCCTTCTTTATTCAGGGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171931-FBXW10:NM_031456:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(83.8=64.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTCAGTGGCCATGAGGG
R:
CTGTTGCCCTGAATAAAGAAGGAC
Band lengths:
302-1552
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)