MmuINT0063652 @ mm10
Intron Retention
Gene
ENSMUSG00000047730 | Fcgbp
Description
Fc fragment of IgG binding protein [Source:MGI Symbol;Acc:MGI:2444336]
Coordinates
chr7:28106038-28107494:+
Coord C1 exon
chr7:28106038-28106609
Coord A exon
chr7:28106610-28106920
Coord C2 exon
chr7:28106921-28107494
Length
311 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TAACTGACCCTTCCACACAGGTG
3' ss Score
8.5
Exon sequences
Seq C1 exon
CCCTCCAGTGCCCTGCCCACAGCCACTACCAGCTCTGTGGTGACTCCTGCCCTGTGAGTTGCCCGAGCCTCTCCGCCCCTGTGGGCTGTGAAACCATCTGCCGTGAGGGCTGTGTCTGTGATGCTGGCTTCGTGCTCAGTGGTGACACCTGTGTCCCTGTGGGCCAGTGTGGCTGCCTCTACCAAGGGCGCTACTATGTGTTAGGTGCCACCTTCTACCCAGGCCCTGAGTGTGAGCGGCTCTGTGAGTGCGGGCCTGATGGCCAGGTCACCTGCCAGGAAGGGGCAGACTGTGAGCCCTATGAGGAGTGCCGGATAGAGAATGGCGTTCAGGCCTGTCATCCCACTGGCTGTGGCCACTGTCTGGCCAACGGAGGCCTCCATTATGTCACTCTTGATGGACGGGTGTATGATCTTCATGGCTCCTGCTCCTATGTCCTGGCCAGCGTCTGTCACCCAAAACCTGGAGATGAGGAGTTCTCCATTGTGCTCGAAAAGAACTCAGCTGGAGATCCCCAGCGTGTGGTGGTGACCGTGGCAGGCCAGGTTGTGGGCCTGGCTCGAGGGCCACAG
Seq A exon
GTGAGTGGACACAGCCCTGCCCATGTTCTATAGGGACATGACCTCAGCTGGGCCTTACCCTATAGGGTCTCAGTAGACCTTGGAGAATTCCAGACTTCGAGAATAGCATTGCCCTACCATTATGGTTCTGGGTTTGTGGATAAAGTCTACTCAAGTCATGACCTACCTCATCCTGGGGTTTAGCACATCTGATTCTAGTCAGAAAGGGACTTAGCTCCTCCGAGAAGATACATCGCTCTCTGAAGGAGCTGAGAGTGCCTGTCTCAAGCTGAGGCACTGGCATCCTCATCCTAACTGACCCTTCCACACAG
Seq C2 exon
GTGACTGTGGATGGTGAAGTCGTGACCCTGCCTGTGGCCACAGGCCACGTGAGTGTGACAGCCGAAGGCAGAAACATAGTTCTGCAGACAAACAAGGGAATGAAGGTTCTCTTCGATGGCGATGCCCACATCCTCATGTCCATCCCGAGTTCCTTCCGTGGACGTCTCTGTGGCCTCTGTGGGAATTTCAATGGGAACTGGAGTGACGACTTTGTGCTGCCTAGTGGAGCAGTGGCCCCCAACGTGGAGGCCTTTGGAACCGCATGGCGAGCTCCCGGCTCCTCCTTGGGCTGTGGTGAAGGCTGCGGGCCCCAAGGCTGCCCAGTGTGCTTGGCAGAGGAGACACAAGCATATGAGAAAAATGATGCCTGTGGGAAGATCCGGGACCCCCACGGCCCCTTTGCAGCTTGCCACAAGGTTCTGAGCCCCTTGGAATACTTCCGCCAATGTGTGTATGACATGTGTGCCCATAAGGGTGACAAAGCCTATCTCTGCCGTAGCCTGGCTGCTTATACTGCAGCCTGTCAGGCAGCTGGGGCAGCAGTGAAGCCCTGGAGGACAGACAGCGTCTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047730:ENSMUST00000138392:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=28.3),PF127142=TILa=WD(100=29.8),PF0009420=VWD=PU(47.3=36.6)
A:
NA
C2:
PF0009420=VWD=PD(51.4=39.6),PF087426=C8=WD(100=39.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTTCATGGCTCCTGCTCCT
R:
AATTCCCACAGAGGCCACAGA
Band lengths:
348-659
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types