BtaINT0061719 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005261 | FCGBP
Description
Fc fragment of IgG binding protein [Source:HGNC Symbol;Acc:HGNC:13572]
Coordinates
chr18:49735727-49737202:-
Coord C1 exon
chr18:49736631-49737202
Coord A exon
chr18:49736301-49736630
Coord C2 exon
chr18:49735727-49736300
Length
330 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
CACCTGGCCCTTCCATCCAGGTT
3' ss Score
8.54
Exon sequences
Seq C1 exon
CCTTCCAGTGCCCTGCCCACAGCCACTACCAGCTCTGTGGTGACTCCTGCCCTGTGAGCTGCCCCAGCCTCTCAGCGCCTGAGGGCTGCGAGTCCACCTGCCGTGAGGGCTGCGTCTGCGACGCCGGCTTCGTGCTCAGCGGAGACACCTGCGTGCCTGTGGGCCAGTGCGGCTGCCTCCACGAGGGCCGCTACTACCCGCTGGGCGAGACCTTCTACCCGGGCCCTGAGTGTGGGCGGCACTGCCAGTGTGGACCCGGCGGCCAAGTCAGCTGCCAGGAGGGCGAGACCTGCAGGCCCTACGAGGAGTGCCGGGTGCAGGACGGCGTCCAGGCCTGTCGCCCCACCGGCTGTGGCCGCTGCCTGGCCAATGGGGGCGTCCACTACATTACCCTGGATGGACGCGTCTATGACCTGCATGGCTCCTGCTCCTATATCTTGGCCCAGGTCTGCCACCCACAGCCTGGGGACGAGGACTTTACAATTGTGCTTGAGAAGAATGCAGCTGGAGATCCCCAACGTGTGGTGGTTACTGTGGCCGGCCAGGTGGTGACCCTGGCTCGAGGGCCGCAG
Seq A exon
GTAAGTGGACCCGGCCTTGCCCTGGGGGGGTCTGAGGAGGAGAGGGCCTAACCTAGGGATTTTGAGAGCGATATGAACCCAGTGCAAGGGGACTAAGGAGGACATAGATCTGTCCTGGGGGCCTGAAGGAGACATGGCCCCAGCCTTGGAGACTGAGGAGACATTGTCAGCCTGGGGTCTCTGAAGGGAGCATACTCTGCCCTGGGAAGTCTCTGGGGGACATGGCCTCACCCTAGTGGAACTGAGAGAGAGTCTGTAGCCTGGGAGTCCGAGGGGACAGGCTGACCTGTGCTTCTCTGAGTCCCTGACCCACCTGGCCCTTCCATCCAG
Seq C2 exon
GTTACTGTGGATGGTGAGGCCGTAGCCCTGCCCGTGGCTGTGGGTCACGTGCGGGTGACGGCGGAGGGCCGGAACATCGTTCTGCAGACGACCAAGGACCTGCGGCTTCTCTTTGATGGCGACGCCCACATCCTCATATCCATCCCTTCCCCCTTCCGCAACCGGCTCTGCGGGCTCTGTGGCAACTTCAATGGCAACTGGAATGATGACCTTGATCTGCCCAGTGGCACCACGGCCCCCAGCGTGGATGCCTTTGGAGCTGCATGGCGGGCACCTGGCTCCTCCCAGGGCTGCAGCGAGGGCTGTGGACCCCAAGGCTGCCCTGTGTGCTCAGCAGAGCAGACGGCACCATACGAGAGCCTCGAGGCCTGTGGGCAGCTCCGGGATGCCAACGGCCCCTTCTCAGCCTGCCACGCGGCGCTGAGCCCCTCTGAGTACTTCCGCCAGTGCGTGTATGACCTCTGTGCCCAGAAGGGCAACGTCACCTACCTCTGCCGCAGCCTGGCAGCCTACACAGCGGCCTGCCAGGCGGCCGGCATGGCTGTGAAGCCTTGGAGGACAGACAGCTTCTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005261:ENSBTAT00000006924:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.010
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=28.3),PF127142=TILa=WD(100=29.8),PF0009420=VWD=PU(47.3=36.6)
A:
NA
C2:
PF0009420=VWD=PD(51.4=39.6),PF087426=C8=WD(100=39.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGGGGCGTCCACTACATTA
R:
TGGATATGAGGATGTGGGCGT
Band lengths:
345-675
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development