RnoINT0060191 @ rn6
Intron Retention
Gene
ENSRNOG00000042899 | Fcgbpl1
Description
Fc fragment of IgG binding protein-like 1 [Source:RGD Symbol;Acc:1311906]
Coordinates
chr1:85088038-85089380:+
Coord C1 exon
chr1:85088038-85088606
Coord A exon
chr1:85088607-85088963
Coord C2 exon
chr1:85088964-85089380
Length
357 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TAATGGACCTTTGCCTCCAGGTG
3' ss Score
7.96
Exon sequences
Seq C1 exon
CCCTTCAGTGTCCTGCCCACAGCCACTACCAGCTCTGTGGCGACTCCTGCCCTGTGAGTTGCCCGAGCCTCTCAGCCCCTAAGGGCTGCGAGACCATCTGCCGTGAGGGCTGTGTCTGTGATTCTGGCTTCGTGCTCAGTGGTGACACCTGTGTTCCTGTGAGCCAGTGTGGCTGCCTCCACAATGGACGCTACTATGTGCTGGGTGACACCTTCTACCCAGGCCCTGAGTGTGAGCGGCTGTGTGAGTGCGGGCCTGGTGGCCAGGTCACCTGCCGGATAGAGATCTGCGGGATCCATGAGGAGTGCCGGATAGAGGATGGCATCCGGTCCTGCCACCCCAAGAGCTCTAAATTAATGCTGGTCCTTCATGGTATTCACTACACCACACCCGACGGCTTGGTTTACGACCTCTATGGCTCCTGCTCCTACATCTTGGCGCAACTTTGTTTCCTGAAACCTGGAGAGGAGGAGTTTTCCATTGTGCTTGAGAAGGACTTGGCTGGAGAGCCCCAGCGGGTGGTGGTTACTGTGGCAGACCAGGTTGTGGTCCTGGCAAAAGGGCCACAG
Seq A exon
GTGAGTGGACACAACCCTGCCCATGGTTCTACAGGGACACAGTCCCACATAGGGGGTCACCTGAAGTGATGCCCCTACTTTGGAAGGTCTTAGGGGACAATGACCAACTCGAGAGTCCTGAGAGTACCCCAGGACCTGGCGATTTAGAAGGCAAAGTGTCTACCCTGAAACCTATTGGAGACGTGGCCCTGTTGCTACCCTGGGAGATTAAAATGACCTCACTCCAGTCCAACTACAAAGCACTTAGATCTGTCACGAGTCTAAGAGAGACAGTGTCCCTTGTTCTTTGTCAGAACTATTGAGCCTTCCTTAAAGTGATGTTCTCTGACCCCCAACTTAATGGACCTTTGCCTCCAG
Seq C2 exon
GTGACCGTGGACAGTGAGGTTGTGGCGCTACCCATAGTCGCAGGATCCACATACATAACTGCTGAAGGCCGAAACATATTTCTGCAGACAAAAAGGGGGCTGAAACTTCTTTTTGATGGCGATGACCATATCCTCATGTCCATCCCAAGTGCCTTCCGGGGACGCATCTGCGGCCTCTGTGGGAACTTCAATGGGAACCAGAGTGATGACTTCGTGCTGCCCAATGGAGCAGTAGCCCCCAACGTGGATGCCTTTGGAGCTGCATGGCGGGTTCCCGGCTCCTCCTTGGGCTGTGGTGAAGGCTGTGGACCCCAGGGCTGCCCTATGTGCCTGGCAGAAAAGAGAGAAGCGTTTGAGAAAAATGATGCCTGTGGGAAGATCCGGGACCCCCAAGGCCCCTTTGCAACTTGCCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042899:ENSRNOT00000057120:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=28.4),PF127142=TILa=WD(100=29.5),PF0009420=VWD=PU(46.6=35.8)
A:
NA
C2:
PF0009420=VWD=PD(52.1=54.7),PF087426=C8=PU(28.9=15.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCACCTGCCGGATAGAGAT
R:
GACTATGGGTAGCGCCACAAC
Band lengths:
343-700
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]