MmuINT0065292 @ mm9
Intron Retention
Gene
ENSMUSG00000075415 | Fnbp1
Description
formin binding protein 1 [Source:MGI Symbol;Acc:MGI:109606]
Coordinates
chr2:30900402-30908687:-
Coord C1 exon
chr2:30908505-30908687
Coord A exon
chr2:30900417-30908504
Coord C2 exon
chr2:30900402-30900416
Length
8088 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
3' ss Seq
CTCTTCAATTTCCCACGAAGCTT
3' ss Score
4.31
Exon sequences
Seq C1 exon
CTTATGTCCCTTTTAACATCCCCCCATCAGCCTCCCCCTCCGCCCCCTGCCTCTGCCTCACCCTCTGCTGTTCCCAACGGCCCCCAGTCTCCCAAGCAGCCAAAGGAACCCCTCTCCCACCGCTTCAACGAGTTCATGACCTCCAAACCCAAAATCCACTGCTTCCGGAGCCTAAAGCGTGGG
Seq A exon
GTAAGTTCCGCTCCGGAGTCCTGCGTCTCTTGCGCACCATGTTGCATGTCTCATTCTGCGTCTTTACTTTGTGAGTAGACCCAGTGTGTTTTCCCGTAGCATCCAGAGGGAGAGAGAGCCTGAGCCTAGACTCCCAGAGAGCAGACGAATGACAGAAAGAGAGGAAGGAAAGAGCCATGCGGAGGGGAATGAGCAGCAGAGAGCCAGGAGGCCTGAGGTCTTTGACTCTCTAGTCCGTGCTGGAAGCACCTCACACTTCCCCTTCAGAGATTCCGAGTCATTCATTTTCCTCCTTGGTCTCACCAACTCTGACTCGCTCTCTCAGACAATGTAGAAGATGAGGAAGTGGAAGCGACTAGACAGTCAGAAAAATCTGTGTTGAGTAATTACAGACAGGGATGCGGCACAGGCTCTGCTGCCCAAATGATGCTGCTGGCGAGGAGGAAGGAATCGGACCGGGCTTACTGGTTCCCTTGTGAAGCTAAGGGGTAACAATAGCATACCTCTCACACCTGCATCTCTCTGCAAAGGGAGAAGGCACCACAGCGGCGACATTCCTCCACGGCTCCCTCTCCACTCAGTCCCCACCTTCCTCGGTGGTGAATCCAGTGAATTACTGGAAGCTGTGGAGCCGGGATATAAGTGTCAGCTCACGTGGTCCTGTGCTCTGTGGCACCCAAGTTCAGGGAACAGTCTCTTAGACTGCGGTTGCTGTTACGACTCAGGTTTGAAATCCTTCGGAGGACCAGAAGTTCAGGGACATCCTTGGGTATAGAACAAGTCCCACGCCAGTCTGAGCTACCTGAGATTCTGTCACAAAACAGTTTGTTACCATACATGAACCTCTATGAGAATTAGGCAGTCGTCCAGCATAGATACCAGCTTAGCTTAATGGGAAAAGGCTGGGAAAAAATAATTTGTGACCTCCCAAGTAAAACTAAGTGAGCCTCCTCCAGTTGTATTTATAATAAATGTCTGGGCTGAGCGTGGCGGCTCATATCTGTAATCCTAGCAGCTAGGAGGCTGAGGCAGGAAAATGTTATGTTTAAGGCTAGCTTGGACTACATGTCTTTCCAGGCTAGCCTGGAATGTAACGTGAGTCCCTGCCTCAAACAAACAGACAAGAAGTCTGTAGCCGAATGGTCAGTGCCGCACCCATGTGCAGGTCCTGGCCTGTGGCGTTCCCCTGCAGACAGATGTAGTTGAATGCCTTCCTCTGGGATCTCCAAGCATCCAAGCAGCTGAGTACTGAGACACTTCTTCCTTTTCTTTTTTTGGAGACAATCTCTACATATAACCCTGTGTGTCCTGAAACTGTGGCCCAGGCTGGCCTAGAGCCTCTCTGGAGTGCTGAGATTAAAGTCATGTGCCACCATGGCCAGCTGGAGACACTTCAGTGTAGTCCCTGAGAGCTCAGTTATCCCTAAAGCCAGAGTTGGGTCCAGACCGTGGGCTGATAAGCAGCATTCTTGCAAATGGAAAGTTCCCAAGTTTTGTGTTTTCTCCCCCACCGTCCTCTGGCATGGGAAAAACTTTCAGCCGTGGCTAATTAGATGAGTGTCTGCCTCAGATCCATGCGCTGGTGGATCTCTTTATCTGCAGAATCCCAGTACTGAGAGACTCTTCATTTCATAGGAACAGTGTTCTGGTCTATATCTAACCTTAGTACTCCAGAGGCTGAAGCAGGAGGATTGCAGTAAGTTTAAGACCAGCCTGGGCTTCATAATGAGATCCTATTTCCAAAGAAAGAGAGAGAAAGGAAGGGAGGGACGGAGGGAGGGAGGGAGGGGCCTGGAGTGTGGAGTAGCTGGTAGAGTACTTACTTTGCACGAATTCCCAGCACTGCACAAAACATGCAGTGGTTCAGCCTGTGAAGATCAGAACGTCAGCCTAGACTACGTGAGATCCTATCTCAAAACTGAAATAAAAGAATGGGTGGAGAAGCTGGGCAGTGGCGGCGCACGCCTTTAGTCCAAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAAACCCTGTCTCGAAAAAACAAACAAAGCCTGGGTGGAGAAATGGCTCAGTAGGTGAAAGTGCTGAGGGAAGCCTGATTACCTAAGTCCAGTTCCTCGGCCACAGTGAGAGAGAGTCGTCTCCCCAAAGCTGCCCACTGCCATCGCATGCATACAGCCAATCAATCAATCAATCAATAAATGAATAAATAAATACATGAATAAATAAATAAATAAGAAAGAGTATATAAAAAGAAGAGTAGTGTCCAAAAAGATCAAGGTTGAAGGAAGGAAGGGTACACTTGAGAGAACTTGTTCTAAGGCTACTTAGTAGGCCAAGTTAGAAATCAGAAATTTGGGTTGGTGAGGTGGTTCAGAGATACGTGCTCTTGCTGCGAAGCCTGACAATTAAGTTTCATCTCTGGGACCTATAAGGTGGAAGGAGAGAACCAACTCTTGCAAGCAGCTCTCTGATCGCCACGTGCCCACCTTAGTGCTCGAACACACTCACACACACACACTGGATAAATGAATGTAATCATTTTTTTTAATTAAATCAGAAATTTAATTTCCTAAAAGTGTCAGGACAGCCACTGTCAGCAGGCAGAGTAGCTTCAGAAGTGCATGATGGATTGTGCTGAGCTCTGTTGTTGGGACTGGCTGAGCAATCAGCCGCTTCCTGGCTCGATTATTCTGGCTTTTAGAACTTCACTCTTCATCAGAGAAATTTCCATGAATGTAACCAGGGTGAACCAGGCTCAGAGTCATTAATTTCATCACATTACGACATGATCATTCGTGTTTATAAACATCTGCATCTGTCTGTCAGACATGGGGGATAAGACGTGCTGAGTGGCTTCAGTTACCATCCATGTGCGTGTATGGTCCATGACACCATATCCCACCGTCTCCTGGTCATCGATGGTTTCTGCGTCTGTGTTCTGATGTCCCCAGAGTGTGTTGCCAAAGTGTTGCCAAAGGCCAAAGAATGTCTGTGTTCGATTAGTATAAGAAAAGATGGTTTAAAAAAAAATTTGATTTCAGCAAACTTCTTTGATGGAAACTTTCCTGGAAGGTAAGTGCATTCTCCCAGTGGCAGACAAGCTAGAAGCTGTGACAGGGGGACCGGAGAGCGGTTGTGCTGTCGTCAGATCTGCGTAGGGTCAGATCTGACGGTTCTTCTGGCCAAGAGCGGTGGGGGAAAGGGAACTGGGGGATGGTGGGTGGGAGGGAGGAAGGAAGAGGGGAACAGCAGGCCTTGGAAAAGAAAACATCTTAAACCCAACATCTGGGGAACTAGATAGACCCTATTTGTTAAGCAGCTTCGGTGGGGGGTGGGGGGATGCCGTTGGTAGGTCCATGCAGGCCAGGGTCAGGGAGCCCTCTCTCCCGGTTTACTTTCCCCTGCACCTGAACTTGAGACTCTCGAGCAAATGCGCTCCAGGGAGGATTCTCGGAGAATAACTTGGCTGTGGCTGTGGTGTCTCTTGTTCATTCCCTTCAGATTTTTTTTCATTTTGTGTTTTGTCTGTGTGAGCGTTCCCTGTGGGCATGCCTGCACCACATGTCTGTCTATTGACTTCAGAGTACACAAGAAGGCACTGGATCCTCTCTGTCTGGAGTTACCAATGGTTGTGAGTCACCCCGTGGGTGCCGGGAATCGAACCCAAATACTCTGCAAGAGCAGCACGTGCTCCTAACCACTGAGCCATCTCTCCCGTGCCCTGTGGTGTGTCTTATAATCTATCATATTTCACAGCCTTCAGATTTGAATTCTAAGTATCTGATTTAATGACGAGTGTGTAGAAATTGTATGCAAACATTTCTCTTTCTTTTCTTTCTTTTTTTTTGAGATGGAGTCTCACTGTGTAACCCTGGCTGTCTATGAACTCACTATGTAGACCAGTCTAGCCTTGAACTCACAGTGATCTGCCTTCCCCTGCCTTCTGAGTGCTAGGACTACAGGTTTGCACCACCCCCACCTGGCTCAGTGTGCAAACATTTCTTAGCATAGCTTAGTTTATTTTAACATAATTAAACAAGATTAAATAGTTTTGTGATATTTACAGAGGGTTTGCACTGCCAGACCATCACTGTTCCATCCTTACACATGTAAGATGTACAAACATGTACAAAGATTAGAGTGGAGAATGTGTCCTTAGCGCTGTGTGCGAAGGCACATGCCTATGATTCCAGACCCGGGGAGGAGGTGAGAACTGGAGGACTAGAAGATCAGAGTCATCTTCCCTACACAGGGAGTTCGAGACTGGTGTGAGCTACGTGACAGGAAAGGCAAGGGGTGTGGAAGAGATAGAGATTGATGGTGTGGATAGATAGATGGATAGAGAGATAGAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAACGAACCTGTCCTTAATTTGAGTCTACAAAGGGTAATTCTATTGTCTTAAATGAGGGTTTCCTTTTGAACCTGTGCAAAGTACAGCTAAAACTAGATGGCTTCCCTCATAGTTTAGAGTTAATCTTAGGAAAAGCCATCATAGTAGAGCAAGACATTTTAGATGTCCATTGTTGCATGTTACATTGTGAATGCGTGGTTTTCCTTTTTTCTTTATCTTACCCTGTTCTCTTGCTGACTGTTGGCAGACTCAGTCTCTGTGTTATCACAAAGAGCTCATGAAGAGGACTCTAGGGAAACCCACACACGCCTTGGAGGCTAGGGACTATGTTGTAAGTCCGCCTGTGATGCAGATAAGACAGTCACAGCCAAAGCACTAACTCCATGGACAGCGCCAAGACTGGGGACACAGGTGCAGCTGTAACACTTCTATCCCACCGAACAAAATTCTCTGGGACAAGGAGGGGATATTACTGTATAAAATTAACAGCTACCGTAGCTCCAAAACCTGTATAGGAAGATCCAAGCCCTCTCATGGGCATCCAATGCCCCAATGATACCACTGAGCTAGCTCACTGTCTGAGTGCCCGCTTTTTGTCTTAGTTCTGGTAAAATCTTTAAAGAGCTGCAGCAGCCACCTGAGATAGCCATGGTATCTCTGGATATGAGTTTACGGCAGAAATTTACCCACCAAATACAGCTATTGCGTGTGGTCAACAGAAAGCAACAGTTTAGGGCTGGTGATGTGACCGTGCAGAGATCCACATCTGTGTTTGTAGCCTGTAGGTCACTAGGGAGTCATGTCACAAGCCTGGAGAACAAAAACTCAAAGAAGCATGGGCAGAGACGGTTCCAGGAGAGTTCACCAACTTGTGTCTGCTCGGGCACTTACCGTCCCCTTTCTTTGCGCTTGAGGTTAGTAGCTGTGACCGTCCAATGACACATGGACACGCTGGCTCTGTCTCCCTCCTGTGTTATTGATGCTTGCTTCTCCCAGAGCCCCTAACTGTCACCTGAAGCTGATGGCGTTTGGTCCCTTAGTGTCTAGTCACACACTCCATGGGGTCTTTGCCGTTATTCTTCTAGGAGACTGCTTTCTAATCGGAAGTGACCTAATTGTCTGGCTTATTTATGACTTACAACCTGAAAAACACTTTAGTCATCTTTAAAAAGAATTCCGCACACTGAGGTGGCACCTCTGGCAGGTGATCTGTCACCACCCACTTCAGAAAATGGAATTTGGGAGTTCCGGTGTTTCCAAAAAACTGAGTGTGAGAATTTGGTATTTCCTGTTCCTCTCTTGGAACAGGTGTTCAGTTTTAATCACTTGCTCTTATTTTGAACTGGAAACCTTCCTATTGATACTACAAATTCGATGCTAGGAGATTTCGATTATAATCTCAAGTCATGGGAGGAGCCCCATAGAGAATAAATAGTGAGCCGGGTTCTAGAACTTCGCAAGAAGATTGTGTGTGAGGAAGTGCTAGTGTCTGCTGGTGTGCTCTGTGGGCGCCGTCTCCTGCTCTGCACCATGGGTGTTGTCTGTCTGAATGACGAGCTCAGCTTGTGACAGACAATCTGTGCTTTAGCTCCAGGAGGCTCAACAAGTTCAGGGCCGTGCCTAAGCAGACATTCTTGAAAAGCTGTTCAATTTCTCTCCTATTTAACAATCTCTTCCTTCTACGTGGGAACAGTTTCTTTAAAAAGTGATTGCCTATATGCAAAGGAGTATCAACTTTTTTTTTTCCTTTGAGACAGCATCTATGCTGCAGTTCCTGCTGGCTTGGTACTCACTATGTAGACCAGGCCTCTACCTCCTGAGTGTGCGCCATCAAGCCTAGCTAGAGGTCTCAGCTTTAAATAATCTTAAGGATGCAAATAATATAAAAACTGGCTAAGGAATTTTAAGCCCTCCCTATGCAGCCTAGCAATCAAGTGTGCTTTCTTTGGTAGTTTATCCATGTCTGCACCATATCACCCCTACTAGGATCGTCAGAGTGTCGCATGTCGAGCACTCCCTAGGCAGACAGCAGGGTCTCAGAATCGTGTTTCTATTCTGAGTTCTCAGAGCCGTCCTACTATGCTTTACTCCAGCGATTGAGGGAGGTTTCTAGTCTCTAGGCCCAGCAGTAACGGAGCTGTTGTGGCCCTGTAGTAATTAGCTCACACATACACGCAGCAGTAGCAGCACTGGGACCTAAGGCAGTGCTTACCCATACCCTAAAGTCAGCTTCTACAAGCTGCAGCTCCTGGTCCCGCACCAATGCTGTGTAGCCTCTGTGGACAGTCATGGCGTCCAGTAGCCTCAGGTAGCTTGGCATCCCACTCCTCAGGAGCTGAAGGATCAAGAGATCAAGGCCAGACTGAGCTACACAGCAAGACCCAAGCTCCCTCAAAGGAGATCAATTCATTTTGAAAAAGACCAAGCCTTGAAAGACCAAGCCTCACGGCCCAGGAGGGGTGCTGGTGACAGGTGGGAAATCACATTGTCCTGCATCTCCAACCTGCTGTCAAGAGGCCTTCCAGCTTCTGACCTCCACATGCACGCTGTGGTATGTGTGCACACGCCTACACACATGCGCTCAGGAGCACGTGCACACACACCCCGCACACACACCATCAGTGTAAGGTGGGACGTGCTGGAGAGATGGCACAGCAGTTCAGAGCCCTTGCCGTTCTTTTTTTTTTTTTTTTTTTTTTCTTTTTCTTTTTTTTCTTTTTTCCGGAGCTGAGGACCGAACCCAGGGCCTTGGGCTTGCTAGGCAAGCACTTTACCACTGAGCTAAATCCCCAACCCCGCCCTTGCCGTTCTTACAGAGAACCAGAATTCTACTCCAGCTCCTACATGTCTGCTCACACCCCATGACTCCGGCTCCAAGGGTTCTGTTGCCCTCTTTTAGGCGAGCTTGTACATGCCCTAGAGTGTGCGCACACATATTTACACACATAAGTAAAAATAAGTATTTTTCATTTAAAAAGCCAATGTTAAAAAAATAAAAACTAAACACCAGAAGGAGGGCTGGCTGCCAATGACCCCAGCGCTGGGGGTGGGGGACAGAAGAGAAGAATCGTGGGGAGTGGGGGGCTATGGGGAGAAGCTGCCTATGACCCCAGCATTCAGGAGACAGAAGGGAAGGTTCCCTGAAAACTGAGGCCATCCCAGCCAGGGATGTACATTGGGTAACCCTGTCTCAAAAGTAAAATTTTAAAAAGACTCTGCATAAAGATGTTCTGGGAGAGAAGTGCTATGCAATTTTTTTCCCTCTTAGGGTCATTATTTGTCACCGATATGCCTAGCAGGTTTAAAGTCCTAGGGTCTGTTCCCAGCACTTCCCCAAGTCACCCTCCCCAGGAAGCTGACTTTCAGAAGCATCCAGTGGAAGGTGACTGACTCTGCAGGGCCATGACGACCCTCTCACACCTTGTCTCAGCTCTGGCACCCAAGATGCTAAGAAGAGTTTCTCTCCCGAGCAGCCCCTCCTGTGAACTTTTGCACAGATCTGCCTGGCCATTTCACAAGTCAGCAGGGAACTGCTGTTATGCGTCCAGTGAGACCGGCCAGTGCCTCCTCTTCTGACCTGTGTTTCTCTCTCTCTCTCTCTCTCTTTCCCGTTTGTTACCTCTTCAATTTCCCACGAAG
Seq C2 exon
CTTTCTCTCAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075415-Fnbp1:NM_001177648:10
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.724 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: