MmuINT0065776 @ mm9
Intron Retention
Gene
ENSMUSG00000009566 | Fpgs
Description
folylpolyglutamyl synthetase [Source:MGI Symbol;Acc:MGI:95576]
Coordinates
chr2:32543280-32543554:-
Coord C1 exon
chr2:32543440-32543554
Coord A exon
chr2:32543358-32543439
Coord C2 exon
chr2:32543280-32543357
Length
82 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
CTGGCTCCTTCTGTGTGCAGGAC
3' ss Score
10.29
Exon sequences
Seq C1 exon
CTCTCCTCACATGGTGCAGGTGCGGGAGCGGATTCGAATCAACGGGAAACCAATCAGCCCCGAGCTCTTCACCAAGCACTTCTGGTGCCTCTATAACCAGCTGGAGGAGTTCAAG
Seq A exon
GTACTGTGGCTGGGGACTGGGGAGGGCCCATCCCCGTGTGGGGTACGGGGCTCTGGCCCTGACTGGCTCCTTCTGTGTGCAG
Seq C2 exon
GACGACAGCCATGTCTCCATGCCCTCTTACTTCCGCTTCCTCACACTCATGGCCTTCCATGTCTTCCTCCAAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009566-Fpgs:NM_010236:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF082457=Mur_ligase_M=FE(17.8=100)
A:
NA
C2:
PF082457=Mur_ligase_M=FE(11.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCCTCACATGGTGCAGGT
R:
GGAAGGCCATGAGTGTGAGGA
Band lengths:
173-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: