MmuINT0068496 @ mm9
Intron Retention
Gene
ENSMUSG00000026815 | Gfi1b
Description
growth factor independent 1B [Source:MGI Symbol;Acc:MGI:1276578]
Coordinates
chr2:28470797-28477502:-
Coord C1 exon
chr2:28477369-28477502
Coord A exon
chr2:28470918-28477368
Coord C2 exon
chr2:28470797-28470917
Length
6451 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
TTGCCCCTCCTCCCCCGCAGGTG
3' ss Score
13.23
Exon sequences
Seq C1 exon
CACAGAAACGAAAAGGAGAAGTGTCTGTCTGTGCAGAGACTCATAACGTTGACCGAGCCGAGAGCAGTCCCCAGGGACAGTGTGGAGGTTCGTGGCTCTCGGGCAGAACTCAGAAGAGGGACAGCTCCCTGACG
Seq A exon
GTGAGTGCTGCCAGACCCGTGCTGGCTGGGCTCCGCTGAAAAGTTCGTCCTGGGTGCCCAAGGCAGGGAGGGTGTCTGCTTCCCTTTAAGGTGAGAGGAAGAATACTGTGGTAGTCTCTCTTCTGGATGCAGTGCTCATCACCAGGGGAGAGAAGAAGGAAGGAACATGGACCAGTCCCGATACCCCAAGATAGCGCAAACACCGAGCTTTCCTCCTGCGAATTCTGTGAAACTTCATTGTAGGGGGCTAGGCTTCACCCAGATACACAAAGTCAATCCCCCCCTTCACACACACACACACACACACACACACACACACACACACACACACACACAGAGCACTTTTCTAGGGGCACCAGAGGAGCCCAAATTGGTGTCCCCCTGGGCTAGAGCTGCCCTGTGCCAGGATCTCAGAAGGGATTGGTAGCTCTGATGACCCTCTCAAAAGTTCCTGGAAGCACCGGGGAGGGGAGTCAGACACCCTTTCCTTGGGAATTTACTGAAGGGAAATGACAAGGTGAGGCAGACCACAGGATGATGGAGGGGAGGCACTGCCAAAGGCTCTTGGCTCCTTGAGCATCTGTAGCTCTTCTCACCTAGAGGAAAAGGTGAGTTTGAGTTGTGGTTTTCTTAGAAAACAGGGCTCATTGCAGAGATGCCCACGGATGGATGCTGTGGTCTGTGACTGGGTCCTGGGAAAGCCAGCATTTTTATGAGACTACTGTGGGGAAAGCCAAGTCACCCTAGCTGTGGAGTTGGACAGCCTGGGTACTGGCAGAGCTGTGCCTATCCACCTGTGCTCTTCCAAGTCTGCAAAGCCCTCCATCAGGAGAGGGGTAACATTTTGATTTGGGGGTCAACCTGTAGAAAGTCCCTCGGGGAGTTGGGTGGCTCTGGATGATTTAGGTCTGATGGAATCGCCCCAGTGGTGCTCACCATTCCCAGAACTTCAAAAAGGTGGGTGCAGGTCCCAGGTCTCCCTTCACCGGGGCACAGAGCCTGCTCGCAGGCAGAAATAGCAGGAGACTCCTCCGTCTGAAGGCGTTTGCATTGAATCCTTTCTGGTGTCAGTCCCAGCCGGCCGTGGGGAGTGTGGGGGCTGTTTGCCCAGTTTTGTTTCCATTGTGGTAAAACAAGTCCATAGAACTGACCTTTTTTTTTTTTTTTTTTTTTGCTTTTGAGTTACGTGGTGTTCTTCGGCATGGGCATGGGACGTACACTCTGGTCCCGACTCCTTCCTTCTCTCCTTTCTCACTACATAGTAAAAAAACAACAACAACAACAACAAAAAAAAAATCAACCAAACAACAAACAAATGAACAAACAAAAACTTAATTTCTGATCCTTCTGCCTCCACCCTCTGTCACTGTGTCCTGAGCTACATCCCCAGTCCTTTCTTCTTTTCTTTCATTATTTTTTTAATCTCTCCTTTCTGTTTTTTTTTTTGGGGGGGGGGTCGAGACAGGGTTTCTCTGTGTAGCCCTGGATGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCTGGTGCTGGGATTAAAGGCGTGCGCCACCATGCCTGGCTCCTTTCTGTTTTTAATTTAAGATTACTATCACTAACTAGGCATGGAGGCGCATGCCTTTAATCCTAGCATTTGGGAGCCAGAGGCAGGTAGATTTCTGTGAGTTTGAGGCCAGTCTGATCTACATAGAGAGTTCCAGAACAGCCAGTGTCTCAAAAGAACTACAAAAGTATTGTTGTTGTTGTTGTTTGTTTTTCGTGTAAGAGAGATGTGGGGCTCACATGCCACAGCACGCATGTGGAGGTCAGAGAACTACTTTACAGTGTCTGCTCTCTTTCTGCCCCGTGGGTTCTGGGAACTGAACGTAAGTCATCAGGCCTGCATGGCAAGTGTCTCACCCACTGAGATAGCTCACTGACCCACTTTATTCCATTTTTGACCAGGCTGACCCAGAACTCATGGGCTCAAGCAATCCTGACTTCCTCGAACTTATCCAGGACTCAAGATGCTTGGCCCTAGGCCGAGCACATCTTAAGAGCTGTTCATTAACTATCGAGAAGATTCATCTTGTTCAACCGTGTGTTAATCCCCAAGGCCGTGTCCTTTTGTGAAACTGAGACCCCATCCTTATTAACCAATAACTGTTCTCCTGCACCCAGCCCCTGCTAGCCTCAAATCTAGTCCTGTGAGTTTGCCTATTCTGCACAACTAGATATTTGTCCTTCTGTGGCTAGCTTATCTTGCTCCCTATGTTTGTGGGGTGCATCGTGCCACACATGCTGAAGTTTCCTTCAGTTGGATGTCTGGATCACATTGTGTGCTTTGGCCTGGCTATATTCCTTGCTCATCCATCCTGCCTAGATGGACACTTGTACCTCTCAGCTCTTGCAGATGGTGCTGCTGTGAACGTAGACGGTCAGGGGCTCTGAACTCTGTGCTTTGGTGTATGCCTGAAAGTCATCGCTCACTTTATTTATATATTTATTTGGTGGTAATGGCTACTGAACCCTGGGCTTCCCACCTGCCAGGCACTGACTTTAGGTTCCCTAAGGTGACCCAGGCTCCTGGCCGTGACTCCATGACGTGGCCCTGCAGCTTGTTTGTTGCCTCCCTCCCTTCTGTCTTGACACATAAGGAAGTCCAAAGGGTCCCCTGTAGCTGACCCTGAGAATCAGCCCAGTCTTGCCCAACCCTCCTGAAAAGGGAACCTAACTGACCAGTGTCTCAGACAAGGTAGGTCAGTCCTTAGCTGAAGGTCAACAGATTGTACATGGGATTTTAGAGTAAAGGGGAAGTTTAGAAATCTCTTAGCCCAACGGTCTCCTCTGAGAGATAGGAAAACCAAACCCAGGTTAGTGGTGCACGCGGTCACAGAATCAGACTCATCTCCCGTGGGTTGCACAAGGTTCCTGGAGTCAGGAAATCCTGATGAAGCCACTGTGCTCAAAACCTGGGTGTGCAGGATGTTCCAGCCTTCCAGGCAGCTCTGGCTGCAGTTCCAGCCTGGGTCCATTGACTAAGTCTGGATAGAAGGTTTATGAAGGATGATGACAAGGGGCACAAGGGGCCTCTTGCTGGAGCCCAGATACCATCACTGTCTCTGTTTTATGAAGAAATCCGAGTGCCTTTCACAATCTCTGCCCTGAGCTCTTTCTCAGAATGGTTCGTGTGAATCAAAACCGAGTGGTTGTTAATTAACTACATTATAGGTAATTGGTTCCCCTTTCTTTCTTTCTTAACTCAGCTAACAAGGGCCAAAAGCAAACTCTCTGGATACTCTTGGCTACTGCTGTAGGCTTGGGGGAGGGGGTGTGTGTCTGACCAAGGCTCAGCTGTCCTGATGGAAAAGAATGCTCTAGAAGGGAAAGGATAGAGCTAAGGCAACCCAGTTGGAGGAAGCAAGACGCCCAGGACCTCTTGCTTCCCACGTAAGCATAAAGCATTCAGTAAGTGCTCATGAATGTAGGATGGAGGTCCTGGTCCTGTGTTGCTCTGGGTTTGGGTCAGCTGACCTAGGGTCACCTCTAACTGGACCACGGGCAAAACTGCCTTTAAGGAAGTCTGTTCCAGGTGAAGCTAGTTGGGACTCTGTGTGGGGTCTTTGGGGATCAGAGGAATAAGACCTTTTGTCCTCGCGCCCAGCTGCTTTTGATACAATCATCTATACCAGAGGCCGCTGTGAGGAGCACAGATGGTGTGGTGGGGATACAGGGTGAGTCAGAAGTCAAATCCAAACAGGACAGTAGCCCTGGGCCTGCCTCTGTCCTGACTTCAGAGTCAGTACCCTCTCTAAGCCTTGAGATCCCCACCTGCAACCAAGGACACTTCCTACTTCCCTGCCCCCTGGGACACAATGCACAGAGTAGGGCAGCCACCGTGGCTTGGTTTCCTCTTTGGTGTACTGTGTAGTGACTGTCTCAGTGAGGACCTGGCATGAAAGGCCTGGGATAGCCTGTGGCACACAGACCACACTGAGTAACTGTTGTCCCTCTGCAGTGAGTATGGAAGGCCTGGGCCTAGACATATCCACTCCCCCTCCCTCTGCTCAGGATTTAGAGTCCCTCAAGTGAAGACTGGGGGGGGGGGCAGAAGGGAGAAACCCAGGGAGGGAGGGGGCAGGAGAGGAAGGCTGGCCCAGGAAGATAAGGTCTCGGCTGCTATATGTACCAGGATGAGCAGGGGTCCTTCCAAATGTCTTGTTTAGAGAACTAAGAATCTGTCAGTGGAAAAGATCAAAGAGTCTAAGTCCCATCCTTCATTTTAGAGTTCAGAGACTTGAACTTATGCCAGCTCTCTGGTTCATCCTTAAAAGTGCACCTGCTGGGTTGAGCCTGGCCTCCCTCCTGGCCCCTTCAGCTCTTCCTTAGTGGATGGAGATGCCTTGTGATGGCTTAGCCTAGGCATCTGCCATGCACCTTATATGCTCAAGGCTATTTCTTGCTCCCAGCATTGACTGACATTGAATCAGGCCCCCTCTTAGCTGATCTAAATATAGGCTTCACAGCAAGGAGTGCTGGTTCTAGCTACCCTGCAAACAATCCCAACCCCTGCTACTCCCCAGCGGACTTAAGGCCTCTCCTGCCTGGTTTAGGTTCAGCTCCTGGGACAGAGGTGACTCAAGCGCCCTTGTCACAGGCTAAACTCTAAGCTGTCTTTCCTAATCTTGCCTCCCACCCTGGTCTGAGCTGAGGTCTTATCGCCTAGCCTTCACTGTTGTTCAGAGGCGGCCAAATCCGTTTTCCCGCCTTTGCCGGGCATATCACAGATGTAGCCTTCAGTGAGTGGCTGGTCATGGGTGGGTCTGGGACTCCTCCCAGGCTTTCTGAGCCTGAAGAGTCTGGAGTGCGGGGAAGATAAAGGACTCCACGGGGGTTCTCTGTCTCCCAGGGCCATGGGACACTGCACAGGCTAGGACAGGGATAGGAACCATTAATGGGAGAGGAATCAGATGCTGTTCTAGAGGACTGGGCAGGAGACATCTAGCGAGGTAGGCATGCTTCCCACCTTAGGAACTGGGCAGACCCTTTGACTCATTTGGGCCTCCGGTTCTCTCCCAGTCCCTGACTAAGAAGTTAAATGTTGATGCCCAACACCGGAGTTGATAGACATTCACCTCTCTCTGTCTTCATCCACACAGAGACCGAATGTCCAGATGAAGTGGTTGGGTCTCCTCATGTCTCTTTCCATGATTAATAGACGGAAATGCCCCACCATTTCTGGAGAGGGGACTGCGGGCTTAGGTGCTGACTGCAGCAGCTCCCCCTGCAGGACAATACAGGCTTCAATTAAGTCTCTACTTGCCTCACTAGCCTCAAGTCCCTTTAAGCACAGCCCCACCCCCTACCCCACCCCCCTGCTACATCTGGGTTGTGAGAACCTGGGATGCTCACCAGCCTTCCAGGCTGGGTAGCACACCTTAAAGTAAAGGAAATTAGCCTGGGGAAGTGGCGAGTCTGCCCAAATCTCCCCCATGAGCTTCTCTTTTAGAGAGTACTGTTGTTTAGTTTGGTTTGCTTTGTTGGGACAGGGTCTTTCTATGTTTGTCCTGGCTGGCCTGAAACATGATCTATAGACCAGGCTGGCCTTGAACTCAGGGAGGTTCTACTGTCCCTGCCTCCTGAGAGCTGGGACTAAAGGCACGCACCACCACACCTGGCTTTTTCATGAGCCATCAATCTAAAATCTAAGCTCAGATTGTGTGGTGTCTTGAGTGTGTTGAACTGGCCTCAAGAACAACTTTTAAAATTTGTTGTTTGAGGCAGGGTTTCTACCAGTCTGGCCCTGAACTCATATTAGCTGAGGATGACTTCGAATTGTGGCTTCTCCTGTGTCCACTTTCCAAGAGCTGGACTATAAGAAGGCACCGCCATAATTGGTCATATGCAGTGGAGCTGCACCCCAGCCCTTCAAGTAGCACTAACTGGGGTCCACAAGTGCCTGCTTCAGGGACCCTAGCCAGCCCTTCCTTCTCTTTGCCAAAACAGTCCAGGCTGACTCAAGTTTCTAAGCATGAATGTACTCTGCCTGTGACTAACTCACCGTTCTTGGGGGAGCCAGATGATCAAAGTTAAAGCGTCAATAAGTTTGGTTCCTTCTGGAAGTTCCAAAAAAATCAGTTCATGGATCTCTCTGAGCTCTTGGTAGCAGGAACCTAGAGAGGCCTGGCTCTACTCCCTGCTTTTGATACACAAGTCACTCTCCCTGCGCCCAGCTTTCCCTCTTCTTGTAGGGAGGGACATCTGGGGAGCAAGGCCTATCTTATCTTCAGGCACATCTTAACTTGATGTGATATTCACAGGTGTCAGGTGGATGTGAACTTTGGGGAACGTTATACAAGCCAGCATGGGATAGTGTGCCTTTGATCCAAAGGACTAGCGCTTGTCACTCTTAGTCACTCCCATTGCCCCTCCTCCCCCGCAG
Seq C2 exon
GTGTGGCGTGCACGCAGAAAAATGCCACGGTCCTTTCTAGTGAAGAGTAAGAAGGCACACACTTACCACCAGCCCCGGGCACAGGGTGATGAGCTGGTCTGGCCTCCTGCTGTAATTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026815-Gfi1b:NM_008114:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.706
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: