GgaINT0126017 @ galGal4
Intron Retention
Gene
ENSGALG00000003478 | GFI1B
Description
Zinc finger protein Gfi-1b [Source:UniProtKB/Swiss-Prot;Acc:O42409]
Coordinates
chr17:6753424-6758208:+
Coord C1 exon
chr17:6753424-6753490
Coord A exon
chr17:6753491-6758079
Coord C2 exon
chr17:6758080-6758208
Length
4589 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATT
5' ss Score
5.95
3' ss Seq
TATTTCATGCTTCTGCCCAGGCA
3' ss Score
5.34
Exon sequences
Seq C1 exon
CGTCTCGCTGGGGGCTCATCCAGGGAGATCTCAAGGCAAATCCAGTAAGGCAGAGTCCCCTAAACAG
Seq A exon
GTGATTTATTTATCCTTTTAAACACTCTAACTGTCATTGTCTAGCTTCTTTCTCTGGTACGTTTCATCCCCTTTGTCCTATTCTTTGCTTCTGTTTGCAAATACGTAACGTAGCTCCCCGCTAAGCCAGTTGTGTTGGGCATTCTTTTGTGATAATGCTTTACTTATATCAAGCAAATCAAACTTTAAACAATGACATACTGTATACTTTGCACTCTCACATGCACGTATGAAAATGATAATAGCAGAATAAAACACAGCAGATGTGTCAGTGCTCTCAGATACCTGCAGCCCAGCAAGTTCTGGGCAGCAGGGGCAGTTTCCAGATGTAGACTTTTGCACTTAAGCAATGAGGATATGCTGTATTTTTCCTTTAAATTACTCCTGTACAGACCTTTAGGTTCAGATAGAAGTACATCGCTGCTGACTTAAATGATTAATTGCATAAGTTTTGGTGCTGATTTTGCTAGGTGAGAACTCAGTCTCTGCTGTTGAGGATTTCTGCTTCCAACCTATAATTTATATCACCTCTCCATCCTTTCTAAGTACATGCTAATTAGTGTAACGATTCTTAGCACATGGAATTAGATATTTATAAATATATCTAATATACTACCTGGCTGATTCAATGCATTAAGCAGGAAAACAAATCATTTCCAAGTCCACAAAGTAAATGCACCTACAGAGGGACATAGGATGTGTTGGACTGTGCCGTATAAGTCTTTAAATGGAAGCTTAAGGCAGTTTGCTAAAACCAGTGGCATTCCCAACATCACTATAGGAGCAAAGGAGCTTTTGGAAGGACAAACGCTGCAATTATATTATTAGCATTTTGTCCAGATAATAAAGATCTCCGTGGATTTCCCCATCTCCTTCTTTGACAAAACGTTCACTGTAATTTTCAGGCTCTGGCATAATGCCCATCTGCCCATTCTTACTGCAGGAATGGAAAGTGTTCTGCGCACTTTTCCCCATTCAAAAAGCCACATTCAAATTCTTTGCCCCAAGTACACTGCATTTTACAAGGCTGGCTTGATCTCAGCGTAAAGAGCTGGAATTCTGAAGTATTTTATATTTAAAAGAGTCAGGAGTCCACAAAACTTCTTATTTTACTTGGGCTCTTAGAAATGTCACACACAGGTTATGTTTTGTGCTTTTGTCTTCAAAAATATAGTCTTCCAATAGGTACACTGTTCTTATCATAGAATCACAGAACCATAGAATGGCCCGGGTTGAAAAGGATCGCAATGATCATCTCCTTTCAACCCCCTGCTATGTGCAGGGTCACCAACCAGCAGCCCAGGCTGCCCAGAGCCACATCCAGCCTGGCCTTGAATGCCTGCAGGGATGGGACATCCACAGCCTCCTTGGGCAGCCTTCTTTATAGCTTAATTTTGCCAGGAAAAAGAAAAAAAAAAACACAAACCAACATTACGGTTTAAAATAAATTAAGCAGTAGGAAGGAAATAAGCCTCTTTCAGGCTAAAACTTTATATACTCATCAATTTACATAAAGCCACACAACAACTTTAAGTTAAAAAATTAAATATTTCTTCTGAGTGCCATGGGAGAAAAGGTTTCATTGCTGCAGTTTACACTGTAAATGTGAAAATGGGAAACCTGAATTTAGAAAGGCTTCGAGGAAAATGAGTCAGCTTCAGAACAGAACTTATATTGCACGTTGGGTTCCCGATTCAGGATGGCACAACCCTGCAAACACCTGCCCCCAAAATATGGTCCTTTGGGGTTAATTGTGCCCCTGAAGGAACTGCTGACAGAACAGACCCGTAACCTCATATGGGGAAGAGAAAATACCAATTTCTTCTGAAATATACCAAAGGAGCCAATCCTGTGGTTTGGGGCACTCTGAGCTGCCATGTGCTGAGGTGGGAATTGGGGCTTCAAGAGGAAAATGAGACCTTAAAAATTAGGATACTGAATTCAACCCATCCATGTGCACCTTGGGAAGACGCTCATGCCCATGCAGGCAATGAACCCTGCCATGCAGCTGTCAGAAGGGACAGAAACCATTGCCACTGGGGCTGGCAAGAACAGGCTCCATAAAAGACAAGTCCAACTTGTAGCAAAAGGTCAAAGCTAAATTCTGTCAGAAGCTTCAGTGATGGTCCAAGCCATAGCAGGCCCTGCTGCCCACAGCACTGTGAGGTGCAGTTAGCTGTCTGTAGCAGCTCATCACTTGCTACTGATAATCTTGAATTTCAGAGAGAGAGAGTATTTTTCCTCTGGCAATCTGTGCTCCCAGCTTTCCTCTAAGTTGGCTGTGTGAATCACAAAGACAGTCCGATGCAGTCGTTAATTAACTATGCTGGGCTCCCAGTTCCTGTTTTCTCTGCAAAATGGGGGTGGGGGAAGGTAACTTCCTTTTGCAACGTTCAGTAGTGCATTAAAGATTGTGTTGCTCAGCACAGGCCCTTATCAGCAGCCAAGATACCGGCCCAAATTTGACTTTTGCATATGCTGGGGCAAACATATCCAGAAAACCCTGGTGATTCTTAGGAAGCTACTTTCAACAGCCACCTGAAAAGGCGGGCTGGAATCAGTACCTTCACATACTTAGTGCATGGATACTACAGTAAGCAGCCTTGCTGTGTTTTATGCCACCCACCTGCAGTCCTCCAATTTATCTGCGAGTGTCTCTGGGTGTTCCAGTCGGTAGGCAAGGAGAGCAGCTCTTCCAGGAGCACTGAGCACACGCTCTCACCTTGCCCTCCACCTGCTGTCAGAGCCTCTTCCTCCACTGTGTGGGAAGCCCAGGAAAATTAACTGGTTCATTCAGGCAGACAACGCATACCAGCAAGCTTTAGACATCTGAATACTCTCTATTGTAGCTGGCAAGGTCCTGCCCACTATGGGAAAATCCCTTTGACATGAGTGGAAATCCCATGTAGAAAGGGCTTGCAGCAGGAGTTTAATTTGGGGCACGTCTATGTTGTCAAGTGCAGCTCCAGGCACACATATCCCACCCAGAGCTGAGCAAGGGGGTATTGAGACCCCCCCATCGTGGCTGCTGTGCTGAGCATTTCCATAGGGTGTGAGGCACACGGCCAAGCAGAACACACTGCTGCAGTGGTCATGGCCATCCCAGAACACTTCCACACCACTGAGCTGAGTGCTTCTGCATGCAGGTCAGGCTGATACATTTCATGATACTTACGAGAACCTCACTGGAGAGTTACAGAAACGTAAATACAGCAATGTATTTCAGCATCCCTTCTGTTGTGTGCATACTTATGGCTCCTTCTCAGTACTATTTTGTTCTCTTACTAAAATTAAATTAACACATCCACTCTTGGCTTGTTTTCTCATATTCATCTCAAGTCACATGTACATTTCTCAGAAAAAGATAAAAACAGGTGAGTCATTTCAGAAGGAAAAAAAAAATGGCTGAAGTCATACATGAAAGTGGGAATCCTGGACCAGGCTGAAAAAGGCAGCTGGAGCTGTAATGGGATTTCTAATGGCACTGGGGCTGGTGAGCACCTGACTCCCACAGACAGCAGTGGGCTTTGCAACTTACCTGTCCACAGCAGACTTTGCTGCATGAGTGCCCTTGTATGTGCGTAACTGTAACCAAAGCTGCCATCGTACATCTGGTGCAAATCCATCCCTTGGACCTTTAAATGAAACACCACTGGGCTATGTCATTACATTTAGCATACAGGGGTAAGCACATACACTTCCGAACCCTACAGAGGAGCCAGAGAGGAGCTTTTCCATCCCTGGCTGCTTCCAGGAGCTCACAGTGCTCTGTCCTAACGTATGCAGACACTTCACACCATTCCTACTCAACAGGAACAAACTGTTCTTTTTCAGTAAATAAAGTACTCTATGCTTCAAAAAGAACCCAAACAATAACATAATGCATTTGCCCATCGGTTGAGAGCCAGGACCTACTGCCGACTTTTCATATGAAATATAGCAAGATTTGCTTTTAGTGCTGCTATCTCGAACAATTGCTAGGGAAAATGCAAATACATATGCAAATAAAGCACCAGCTGATATTGGCATACGCAGGATTGAGCCTGTTGTCACACTGCCTGCATGAGAACAGTTGTTGGCCGTGGGGAGCGGGCACAGGGCGGGCTGGGCTCTGGGTAGCAAAGATAACAGATGCATTGCAAGAGAATTTTGTCTGATTAAATTTCAGCATTTTATGTCTGTTCCTAACCCGTCATTTCAACCGCCTGTGATATTTGAGTCGGGTCCTAAAGGTAACCTCTCTCTGCTCAGCCTCTGCTTGATTTTGTCAGCCACAACAAAGAATGATGCCAAGGAGATTCTGAGTTCTGGTGTATCCCTGCCACACAAACACTTCTGGTCCGTAACAGCTTACATACAGCTGTGTGCTTTCTCCAGAGTTAAGACCCATTGGGCGCCTAAAGCCAAGCAACCACTCCCATCCCTTCAGCTGGGTGGGGGGGCCCTTTGAGATGGGCTATCTGTCACCCCAGCAGAAGGGTTTTAATTCTCACCTCTGCTGGATGCAGAGCTGATGTGCTGCGGGAGCAAGGAGAAATAACCCCACAAACTGCAGGGATTTACCTGCTGTTATTTCATGCTTCTGCCCAG
Seq C2 exon
GCAGTGAATGGAAAATGCCACGTTCTTTTTTGGTGAAGAGCAAAAAGGCTCATACCTATCATCAGCACCGCTTTGTGGAAGATGATCTGCCTATATTCACATGGGATCCAATCACCTCTGCTTTCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003478:ENSGALT00000005506:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.026
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]