GgaEX0004549 @ galGal4
Exon Skipping
Gene
ENSGALG00000003478 | GFI1B
Description
Zinc finger protein Gfi-1b [Source:UniProtKB/Swiss-Prot;Acc:O42409]
Coordinates
chr17:6753424-6759850:+
Coord C1 exon
chr17:6753424-6753490
Coord A exon
chr17:6758080-6758208
Coord C2 exon
chr17:6759698-6759850
Length
129 bp
Sequences
Splice sites
3' ss Seq
TATTTCATGCTTCTGCCCAGGCA
3' ss Score
5.34
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
CGTCTCGCTGGGGGCTCATCCAGGGAGATCTCAAGGCAAATCCAGTAAGGCAGAGTCCCCTAAACAG
Seq A exon
GCAGTGAATGGAAAATGCCACGTTCTTTTTTGGTGAAGAGCAAAAAGGCTCATACCTATCATCAGCACCGCTTTGTGGAAGATGATCTGCCTATATTCACATGGGATCCAATCACCTCTGCTTTCACTG
Seq C2 exon
CCGCAGGAGACAGAGACAAGACGCCAGAGGATGGCAAGAAACAGGACCTAGAATGGGTGGTTCCAAAACAAGAAAAGGATTCTTTTCAACCAAAGGAAGAAAGTGTCCCTGTCCAGTACCTAAGCAGGATGCTGCCAGGACCTTCAGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003478_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.026 C2=0.750
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCGCTGGGGGCTCATC
R:
CTTGAGCTGAAGGTCCTGGC
Band lengths:
218-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]