DreEX0034707 @ danRer10
Exon Skipping
Gene
ENSDARG00000079947 | gfi1b
Description
growth factor independent 1B transcription repressor [Source:ZFIN;Acc:ZDB-GENE-091118-129]
Coordinates
chr21:17256372-17259903:-
Coord C1 exon
chr21:17259809-17259903
Coord A exon
chr21:17259236-17259353
Coord C2 exon
chr21:17256372-17256557
Length
118 bp
Sequences
Splice sites
3' ss Seq
AAACAAATCTCATTTAACAGAAT
3' ss Score
5.37
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
TAAGTTTCTAAACATCACAACGGATTTCCTAGCACTTTTCATCAGCTCGAAGCCACTCAAACAATCAAAGGACTTTAAACACAGCATCATTTCAG
Seq A exon
AATCACGGAATCATGCCACGGTCGTTTCTGGTGAAAAGTAAAAAGTCTTATAATGTGCATCGACCAAACGACACCGAACAAGCTCCACAAAAACTCCCGGAACCAGAACCCAAAACAA
Seq C2 exon
TCCCAGCGCTGGTCCCTCTGGAACCAAAAGAGTGTAAATCCCCCGAGCGGCCTCAGGTAGATCCAGTGACCCGTCCGTCCCACAGAGACCCGTATGACTTCATCAAGTGTGAGCGAGAGCCTGACTGCCCAATCCCATCACTCCCCGAGCTGCCCACCGCCACCAGACGTCCCTTTTACATATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079947_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.778 C2=0.603
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTTTTCATCAGCTCGAAGC
R:
GTAAAAGGGACGTCTGGTGGC
Band lengths:
243-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]