HsaEX6063700 @ hg19
Exon Skipping
Gene
ENSG00000165702 | GFI1B
Description
growth factor independent 1B transcription repressor [Source:HGNC Symbol;Acc:4238]
Coordinates
chr9:135853894-135862806:+
Coord C1 exon
chr9:135853894-135854228
Coord A exon
chr9:135862046-135862165
Coord C2 exon
chr9:135862669-135862806
Length
120 bp
Sequences
Splice sites
3' ss Seq
CCCATCCCTCCCCCTTGCAGGTG
3' ss Score
13.6
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
AGAGAAAGCGTGCCGCTCCAAGTGTCGAGGGTTAGAAATGAGAATTCGAAGTCTTGTGTCCTGGAAAGTTTTGATAAGCAAATACGGCTGAGCTCCCGCGCTCTCTTCATTGGCTGCTTGTTCACCGCCAGATTTTGACACAAATAATCAGATTGAAAATCAGGGAGGGGAACAGAAGAGGAAAAACACACAGAGAGACAGAGCAAAAAGGAGAAGTATCTATTTGTGCAAAGAGTCACACAGTTGACAGAGTGGAGGCCAGTCCCGAGAGAGGCTTTGCAGTTCCCACCTCGGGAAGCTCCGGCAGAACCCAGGCGAGGGACAGCTCCGGACAG
Seq A exon
GTGTGGGGTGCACACTGAAAATGCCACGCTCCTTCCTGGTGAAGAGCAAGAAGGCTCACACCTACCACCAGCCCCGTGTGCAGGAAGATGAACCGCTCTGGCCTCCTGCCCTTACCCCGG
Seq C2 exon
TGCCCAGAGACCAGGCTCCAAGCAACAGCCCTGTCCTTAGCACTCTATTCCCAAACCAGTGCCTGGACTGGACCAACCTCAAACGAGAGCCGGAGCTGGAGCAGGACCAGAACTTGGCCAGGATGGCCCCGGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165702-'4-7,'4-6,5-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.794 C2=0.723
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGGGGAACAGAAGAGGAA
R:
CGTTTGAGGTTGGTCCAGTCC
Band lengths:
258-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)