HsaEX6063700 @ hg38
Exon Skipping
Gene
ENSG00000165702 | GFI1B
Description
growth factor independent 1B transcriptional repressor [Source:HGNC Symbol;Acc:HGNC:4238]
Coordinates
chr9:132978507-132987419:+
Coord C1 exon
chr9:132978507-132978841
Coord A exon
chr9:132986659-132986778
Coord C2 exon
chr9:132987282-132987419
Length
120 bp
Sequences
Splice sites
3' ss Seq
CCCATCCCTCCCCCTTGCAGGTG
3' ss Score
13.6
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
AGAGAAAGCGTGCCGCTCCAAGTGTCGAGGGTTAGAAATGAGAATTCGAAGTCTTGTGTCCTGGAAAGTTTTGATAAGCAAATACGGCTGAGCTCCCGCGCTCTCTTCATTGGCTGCTTGTTCACCGCCAGATTTTGACACAAATAATCAGATTGAAAATCAGGGAGGGGAACAGAAGAGGAAAAACACACAGAGAGACAGAGCAAAAAGGAGAAGTATCTATTTGTGCAAAGAGTCACACAGTTGACAGAGTGGAGGCCAGTCCCGAGAGAGGCTTTGCAGTTCCCACCTCGGGAAGCTCCGGCAGAACCCAGGCGAGGGACAGCTCCGGACAG
Seq A exon
GTGTGGGGTGCACACTGAAAATGCCACGCTCCTTCCTGGTGAAGAGCAAGAAGGCTCACACCTACCACCAGCCCCGTGTGCAGGAAGATGAACCGCTCTGGCCTCCTGCCCTTACCCCGG
Seq C2 exon
TGCCCAGAGACCAGGCTCCAAGCAACAGCCCTGTCCTTAGCACTCTATTCCCAAACCAGTGCCTGGACTGGACCAACCTCAAACGAGAGCCGGAGCTGGAGCAGGACCAGAACTTGGCCAGGATGGCCCCGGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165702-'19-23,'19-21,23-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.794 C2=0.723
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGGGGAACAGAAGAGGAA
R:
CGTTTGAGGTTGGTCCAGTCC
Band lengths:
258-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains