RnoEX6016164 @ rn6
Exon Skipping
Gene
ENSRNOG00000011353 | Gfi1b
Description
growth factor independent 1B transcriptional repressor [Source:RGD Symbol;Acc:1311727]
Coordinates
chr3:7195909-7203420:-
Coord C1 exon
chr3:7203311-7203420
Coord A exon
chr3:7196636-7196759
Coord C2 exon
chr3:7195909-7196046
Length
124 bp
Sequences
Splice sites
3' ss Seq
TTCCCTCCCATCCCCCACAGGTG
3' ss Score
12.96
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GTCTGTTTGTGCAGAGACTCATAAAGTTGACAGAGCTGAGAGCAGTCAGCGTGGAGGTTCTCGGCTCTCAGGACTCGGGCAGAACTCAGGAGAGGGACAGCTCCCTGACG
Seq A exon
GTGCGGAGCACACTCTGAAAAAAAATGCCGCGGTCCTTTCTAGTGAAGAGTAAGAAGGCGCACACCTACCACCAGCCCCGAGCACAGGGCGATGACCTGGTCTGGCCTCCTGCCGTAATTCCTG
Seq C2 exon
TGGCAAAAGAACATACCCAGAGTGGCAGCCCTGTTCTCAGCACACTGCTTCCAAGCCAGACCTTGGACTGGAGCGCAGTCAAACAGAAGCAGGAGATGCTGCTGAACCAGAGCCTTCCCAAGATGGCCTCAGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011353-'0-7,'0-4,10-7=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.735 C2=0.511
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF153561=SPR1=PU(29.2=44.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGTTTGTGCAGAGACTCA
R:
GCTGAGGCCATCTTGGGAAG
Band lengths:
243-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]