BtaEX6047024 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012772 | GFI1B
Description
growth factor independent 1B transcription repressor [Source:HGNC Symbol;Acc:HGNC:4238]
Coordinates
chr11:103039731-103048005:+
Coord C1 exon
chr11:103039731-103039814
Coord A exon
chr11:103047272-103047391
Coord C2 exon
chr11:103047865-103048005
Length
120 bp
Sequences
Splice sites
3' ss Seq
CTTACCGTCTCTCCTGGTAGGTG
3' ss Score
11.62
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GTGCCGAGAGTCACGAATTGACCCGGTGGTGCTGATACGCAGCGAGACGCAGCCAGGTTCTTCCCGCAGACCGGCTCTGGACAG
Seq A exon
GTGTGGGGCACCCACTGACAATGCCACGCTCCTTCCTGGTGAAGAGCAAGAAGGCTCACACCTACCACCAGCCCCGCACCCGGGAGGATGAGCTGCTTTGGCCGCTGGCCCTTGGCCCTG
Seq C2 exon
TGGCCAGGGACCAGGTACCGAGCATCAGCCCCGTCCTCAGCTCCCTGTTCCCAAACCAGCGCCTGGACTGGACGGACCTCAAACGGGAGCCGCAGCTGGAGCTGGAGCAGAGCTCGATGACCCGGCTGGCCTCCGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012772-'0-3,'0-2,3-3=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.471 C2=0.438
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCGAGAGTCACGAATTGA
R:
GCCGGGTCATCGAGCTCT
Band lengths:
210-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]