MmuEX6100003 @ mm9
Exon Skipping
Gene
ENSMUSG00000026815 | Gfi1b
Description
growth factor independent 1B [Source:MGI Symbol;Acc:MGI:1276578]
Coordinates
chr2:28470275-28477502:-
Coord C1 exon
chr2:28477369-28477502
Coord A exon
chr2:28470797-28470917
Coord C2 exon
chr2:28470275-28470412
Length
121 bp
Sequences
Splice sites
3' ss Seq
TTGCCCCTCCTCCCCCGCAGGTG
3' ss Score
13.23
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
CACAGAAACGAAAAGGAGAAGTGTCTGTCTGTGCAGAGACTCATAACGTTGACCGAGCCGAGAGCAGTCCCCAGGGACAGTGTGGAGGTTCGTGGCTCTCGGGCAGAACTCAGAAGAGGGACAGCTCCCTGACG
Seq A exon
GTGTGGCGTGCACGCAGAAAAATGCCACGGTCCTTTCTAGTGAAGAGTAAGAAGGCACACACTTACCACCAGCCCCGGGCACAGGGTGATGAGCTGGTCTGGCCTCCTGCTGTAATTCCTG
Seq C2 exon
TGGCAAAAGAGCATAGCCAGAGTGCCAGCCCTCTTCTCAGCACACCGCTTCCAAGCCAGACCTTGGACTGGAACACAATCAAACAGGAGCGGGAGATGTTGCTGAACCAGAGCCTTCCCAAGATGGCCTCAGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026815-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.706 C2=0.681
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAAGTGTCTGTCTGTGCA
R:
TCTTGGGAAGGCTCTGGTTCA
Band lengths:
243-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: