GgaEX0004549 @ galGal3
Exon Skipping
Gene
ENSGALG00000003478 | GFI1B_CHICK
Description
NA
Coordinates
chr17:7406089-7412515:+
Coord C1 exon
chr17:7406089-7406155
Coord A exon
chr17:7410745-7410873
Coord C2 exon
chr17:7412363-7412515
Length
129 bp
Sequences
Splice sites
3' ss Seq
TATTTCATGCTTCTGCCCAGGCA
3' ss Score
5.34
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
CGTCTCGCTGGGGGCTCATCCAGGGAGATCTCAAGGCAAATCCAGTAAGGCAGAGTCCCCTAAACAG
Seq A exon
GCAGTGAATGGAAAATGCCACGTTCTTTTTTGGTGAAGAGCAAAAAGGCTCATACCTATCATCAGCACCGCTTTGTGGAAGATGATCTGCCTATATTCACATGGGATCCAATCACCTCTGCTTTCACTG
Seq C2 exon
CCGCAGGAGACAGAGACAAGACGCCAGAGGATGGCAAGAAACAGGACCTAGAATGGGTGGTTCCAAAACAAGAAAAGGATTCTTTTCAACCAAAGGAAGAAAGTGTCCCTGTCCAGTACCTAAGCAGGATGCTGCCAGGACCTTCAGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003478-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.026 C2=0.750
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCGCTGGGGGCTCATC
R:
CTTGAGCTGAAGGTCCTGGC
Band lengths:
218-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]