GgaEX0004550 @ galGal3
Exon Skipping
Gene
ENSGALG00000003478 | GFI1B_CHICK
Description
NA
Coordinates
chr17:7410745-7413214:+
Coord C1 exon
chr17:7410745-7410873
Coord A exon
chr17:7412363-7412515
Coord C2 exon
chr17:7412952-7413214
Length
153 bp
Sequences
Splice sites
3' ss Seq
TGACACTACTGTGATTACAGCCG
3' ss Score
2.04
5' ss Seq
AAGGTCTGC
5' ss Score
5.38
Exon sequences
Seq C1 exon
GCAGTGAATGGAAAATGCCACGTTCTTTTTTGGTGAAGAGCAAAAAGGCTCATACCTATCATCAGCACCGCTTTGTGGAAGATGATCTGCCTATATTCACATGGGATCCAATCACCTCTGCTTTCACTG
Seq A exon
CCGCAGGAGACAGAGACAAGACGCCAGAGGATGGCAAGAAACAGGACCTAGAATGGGTGGTTCCAAAACAAGAAAAGGATTCTTTTCAACCAAAGGAAGAAAGTGTCCCTGTCCAGTACCTAAGCAGGATGCTGCCAGGACCTTCAGCTCAAG
Seq C2 exon
ACATGAGCATCTCAGGTCTGCAAGTCAAAGACTGCACTAACCCAACAAGCATGCCTACCTTCTACAAAACCGGCTTTTCTTGGGATGCTTTCCAGCTGCCATACAGCTACAGACAGATGTCTTCCACCATGCAGTCAGCCCTCCTGGAGCACCCCGTCAGCCTGTATGGAAGCCATCTCCTGCCAAGCGCCGAGCCCCCTCTGGATTACAGCATGCGGTACTCCTCAGACATGGAGACCTACCACTGTGTGAAGTGCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003478-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.750 C2=0.068
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0403211=Rpr2=PU(43.4=26.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGATCCAATCACCTCTGCT
R:
TGAGGAGTACCGCATGCTGTA
Band lengths:
255-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]