HsaEX6063699 @ hg38
Exon Skipping
Gene
ENSG00000165702 | GFI1B
Description
growth factor independent 1B transcriptional repressor [Source:HGNC Symbol;Acc:HGNC:4238]
Coordinates
chr9:132986659-132988468:+
Coord C1 exon
chr9:132986659-132986778
Coord A exon
chr9:132987282-132987419
Coord C2 exon
chr9:132988197-132988468
Length
138 bp
Sequences
Splice sites
3' ss Seq
ATGGTCCTATCTCCCCACAGTGC
3' ss Score
11.13
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
GTGTGGGGTGCACACTGAAAATGCCACGCTCCTTCCTGGTGAAGAGCAAGAAGGCTCACACCTACCACCAGCCCCGTGTGCAGGAAGATGAACCGCTCTGGCCTCCTGCCCTTACCCCGG
Seq A exon
TGCCCAGAGACCAGGCTCCAAGCAACAGCCCTGTCCTTAGCACTCTATTCCCAAACCAGTGCCTGGACTGGACCAACCTCAAACGAGAGCCGGAGCTGGAGCAGGACCAGAACTTGGCCAGGATGGCCCCGGCACCAG
Seq C2 exon
AGGGCCCCATTGTGCTGTCCCGACCCCAGGATGGGGACTCTCCACTGTCCGACTCACCCCCATTCTACAAGCCTAGCTTCTCCTGGGACACCTTGGCCACAACCTATGGCCACAGCTACCGGCAGGCCCCCTCCACCATGCAGTCAGCCTTCCTGGAGCACTCCGTCAGCCTGTACGGCAGTCCTCTTGTGCCCAGCACTGAGCCCGCCTTGGACTTCAGCCTCCGCTACTCCCCAGGCATGGATGCGTACCACTGTGTGAAGTGCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165702_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.794 A=0.723 C2=0.220
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGTGAAGAGCAAGAAGGC
R:
CCAGGAAGGCTGACTGCATG
Band lengths:
242-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains