BtaEX6047023 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012772 | GFI1B
Description
growth factor independent 1B transcription repressor [Source:HGNC Symbol;Acc:HGNC:4238]
Coordinates
chr11:103047272-103048673:+
Coord C1 exon
chr11:103047272-103047391
Coord A exon
chr11:103047865-103048005
Coord C2 exon
chr11:103048402-103048673
Length
141 bp
Sequences
Splice sites
3' ss Seq
CTGTCTTGTCTCCCCCACAGTGG
3' ss Score
10.56
5' ss Seq
CAGGTGCCC
5' ss Score
5.77
Exon sequences
Seq C1 exon
GTGTGGGGCACCCACTGACAATGCCACGCTCCTTCCTGGTGAAGAGCAAGAAGGCTCACACCTACCACCAGCCCCGCACCCGGGAGGATGAGCTGCTTTGGCCGCTGGCCCTTGGCCCTG
Seq A exon
TGGCCAGGGACCAGGTACCGAGCATCAGCCCCGTCCTCAGCTCCCTGTTCCCAAACCAGCGCCTGGACTGGACGGACCTCAAACGGGAGCCGCAGCTGGAGCTGGAGCAGAGCTCGATGACCCGGCTGGCCTCCGGCCCAG
Seq C2 exon
AAGGACCTGCTGTGACGTCCCGACCCCAGGATGGGGACTCGCCCTCCTCTGACTCACCCCCGTTCTACAAGCCCAGCTTCTCCTGGGACACCCTGGCTTCCTCCTACGGCCACAGCTACCGGCAGGCCCCCTCCACCATGCAGTCTGCCTTCCTGGAGCGCTCCGTCAGCCTGTATGGCAGCCCTCTGGTGCCCAGCGCCGAGCCACCTTTGGACTTCAGCCTCCACTATTCCCCGGGGATGGACGCGTACCACTGCATCAAATGCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012772-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.471 A=0.438 C2=0.242
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGATGAGCTGCTTTGGCC
R:
CTGAAGTCCAAAGGTGGCTCG
Band lengths:
257-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]