GgaEX0004550 @ galGal4
Exon Skipping
Gene
ENSGALG00000003478 | GFI1B
Description
Zinc finger protein Gfi-1b [Source:UniProtKB/Swiss-Prot;Acc:O42409]
Coordinates
chr17:6758080-6760549:+
Coord C1 exon
chr17:6758080-6758208
Coord A exon
chr17:6759698-6759850
Coord C2 exon
chr17:6760287-6760549
Length
153 bp
Sequences
Splice sites
3' ss Seq
TGACACTACTGTGATTACAGCCG
3' ss Score
2.04
5' ss Seq
AAGGTCTGC
5' ss Score
5.38
Exon sequences
Seq C1 exon
GCAGTGAATGGAAAATGCCACGTTCTTTTTTGGTGAAGAGCAAAAAGGCTCATACCTATCATCAGCACCGCTTTGTGGAAGATGATCTGCCTATATTCACATGGGATCCAATCACCTCTGCTTTCACTG
Seq A exon
CCGCAGGAGACAGAGACAAGACGCCAGAGGATGGCAAGAAACAGGACCTAGAATGGGTGGTTCCAAAACAAGAAAAGGATTCTTTTCAACCAAAGGAAGAAAGTGTCCCTGTCCAGTACCTAAGCAGGATGCTGCCAGGACCTTCAGCTCAAG
Seq C2 exon
ACATGAGCATCTCAGGTCTGCAAGTCAAAGACTGCACTAACCCAACAAGCATGCCTACCTTCTACAAAACCGGCTTTTCTTGGGATGCTTTCCAGCTGCCATACAGCTACAGACAGATGTCTTCCACCATGCAGTCAGCCCTCCTGGAGCACCCCGTCAGCCTGTATGGAAGCCATCTCCTGCCAAGCGCCGAGCCCCCTCTGGATTACAGCATGCGGTACTCCTCAGACATGGAGACCTACCACTGTGTGAAGTGCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003478_MULTIEX1-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.750 C2=0.068
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0403211=Rpr2=PU(43.4=26.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGATCCAATCACCTCTGCT
R:
TGAGGAGTACCGCATGCTGTA
Band lengths:
255-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]