HsaEX6063699 @ hg19
Exon Skipping
Gene
ENSG00000165702 | GFI1B
Description
growth factor independent 1B transcription repressor [Source:HGNC Symbol;Acc:4238]
Coordinates
chr9:135862046-135863855:+
Coord C1 exon
chr9:135862046-135862165
Coord A exon
chr9:135862669-135862806
Coord C2 exon
chr9:135863584-135863855
Length
138 bp
Sequences
Splice sites
3' ss Seq
ATGGTCCTATCTCCCCACAGTGC
3' ss Score
11.13
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
GTGTGGGGTGCACACTGAAAATGCCACGCTCCTTCCTGGTGAAGAGCAAGAAGGCTCACACCTACCACCAGCCCCGTGTGCAGGAAGATGAACCGCTCTGGCCTCCTGCCCTTACCCCGG
Seq A exon
TGCCCAGAGACCAGGCTCCAAGCAACAGCCCTGTCCTTAGCACTCTATTCCCAAACCAGTGCCTGGACTGGACCAACCTCAAACGAGAGCCGGAGCTGGAGCAGGACCAGAACTTGGCCAGGATGGCCCCGGCACCAG
Seq C2 exon
AGGGCCCCATTGTGCTGTCCCGACCCCAGGATGGGGACTCTCCACTGTCCGACTCACCCCCATTCTACAAGCCTAGCTTCTCCTGGGACACCTTGGCCACAACCTATGGCCACAGCTACCGGCAGGCCCCCTCCACCATGCAGTCAGCCTTCCTGGAGCACTCCGTCAGCCTGTACGGCAGTCCTCTTGTGCCCAGCACTGAGCCCGCCTTGGACTTCAGCCTCCGCTACTCCCCAGGCATGGATGCGTACCACTGTGTGAAGTGCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165702-'5-8,'5-7,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.794 A=0.723 C2=0.215
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0403211=Rpr2=PU(45.5=27.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGTGAAGAGCAAGAAGGC
R:
CCAGGAAGGCTGACTGCATG
Band lengths:
242-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)