DreEX0034704 @ danRer10
Exon Skipping
Gene
ENSDARG00000079947 | gfi1b
Description
growth factor independent 1B transcription repressor [Source:ZFIN;Acc:ZDB-GENE-091118-129]
Coordinates
chr21:17254076-17259353:-
Coord C1 exon
chr21:17259236-17259353
Coord A exon
chr21:17256372-17256557
Coord C2 exon
chr21:17254076-17254305
Length
186 bp
Sequences
Splice sites
3' ss Seq
GTGTTATTGTAACCTCTCAGTCC
3' ss Score
6.14
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
AATCACGGAATCATGCCACGGTCGTTTCTGGTGAAAAGTAAAAAGTCTTATAATGTGCATCGACCAAACGACACCGAACAAGCTCCACAAAAACTCCCGGAACCAGAACCCAAAACAA
Seq A exon
TCCCAGCGCTGGTCCCTCTGGAACCAAAAGAGTGTAAATCCCCCGAGCGGCCTCAGGTAGATCCAGTGACCCGTCCGTCCCACAGAGACCCGTATGACTTCATCAAGTGTGAGCGAGAGCCTGACTGCCCAATCCCATCACTCCCCGAGCTGCCCACCGCCACCAGACGTCCCTTTTACATATCTG
Seq C2 exon
AACCTCAGCTGGCAGAGTTTCCTCCATACTACAAGAGCTCTTTTGGCTGGGATCATGGTCCTGCCTCATATCAGGAGTTCAGACATATGGGCTTTTCTCCGTCTCTCCTCCATCATGCCAGCAGTCTGTACGGAGCTCATCTGAAGCAGAGCGCAGAGCCACAGCCGCTGGACTGCAGCACTCACTACTCGCCCTCCTCCAACACATACCACTGCATCACCTGCGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079947-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.778 A=0.603 C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACGGTCGTTTCTGGTGAAA
R:
ATGAGCTCCGTACAGACTGCT
Band lengths:
243-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]