RnoEX0038237 @ rn6
Exon Skipping
Gene
ENSRNOG00000011353 | Gfi1b
Description
growth factor independent 1B transcriptional repressor [Source:RGD Symbol;Acc:1311727]
Coordinates
chr3:7194910-7196759:-
Coord C1 exon
chr3:7196636-7196759
Coord A exon
chr3:7195909-7196046
Coord C2 exon
chr3:7194910-7195181
Length
138 bp
Sequences
Splice sites
3' ss Seq
TGGGTCTTATCTCCTCACAGTGG
3' ss Score
8
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
GTGCGGAGCACACTCTGAAAAAAAATGCCGCGGTCCTTTCTAGTGAAGAGTAAGAAGGCGCACACCTACCACCAGCCCCGAGCACAGGGCGATGACCTGGTCTGGCCTCCTGCCGTAATTCCTG
Seq A exon
TGGCAAAAGAACATACCCAGAGTGGCAGCCCTGTTCTCAGCACACTGCTTCCAAGCCAGACCTTGGACTGGAGCGCAGTCAAACAGAAGCAGGAGATGCTGCTGAACCAGAGCCTTCCCAAGATGGCCTCAGCCCCAG
Seq C2 exon
AGGGGCCTCACGTGACATCCCAACCCCAGGATGGGGAATCGCCACTCTCCGAGTCACCCCCTTTCTATAAGCCCAGCTTCTCTTGGGATACGCTGGCCTCCTCCTACAGACACAGCTACCAACAGACCCCCTCCACCATGCAGTCAGCTTTCCTGGAGCGCTCCGTGAGGCTGTACGGCAGCCCGCTTGTGCCCAGCACCGAGTCCCCCTTGGACTTCAGCCTCCGTTATTCTCCGGGCATGGACACTTACCACTGTGTCAAGTGTAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011353_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.735 A=0.511 C2=0.240
Domain overlap (PFAM):
C1:
NO
A:
PF153561=SPR1=PU(29.2=44.7)
C2:
PF153561=SPR1=PD(69.4=54.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGCCGCGGTCCTTTCTAG
R:
AAAGCTGACTGCATGGTGGAG
Band lengths:
253-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]