MmuEX6100004 @ mm10
Exon Skipping
Gene
ENSMUSG00000026815 | Gfi1b
Description
growth factor independent 1B [Source:MGI Symbol;Acc:MGI:1276578]
Coordinates
chr2:28613677-28615397:-
Coord C1 exon
chr2:28615277-28615397
Coord A exon
chr2:28614755-28614892
Coord C2 exon
chr2:28613677-28613948
Length
138 bp
Sequences
Splice sites
3' ss Seq
TGGGTCTTGTCTCCTCACAGTGG
3' ss Score
8.77
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
GTGTGGCGTGCACGCAGAAAAATGCCACGGTCCTTTCTAGTGAAGAGTAAGAAGGCACACACTTACCACCAGCCCCGGGCACAGGGTGATGAGCTGGTCTGGCCTCCTGCTGTAATTCCTG
Seq A exon
TGGCAAAAGAGCATAGCCAGAGTGCCAGCCCTCTTCTCAGCACACCGCTTCCAAGCCAGACCTTGGACTGGAACACAATCAAACAGGAGCGGGAGATGTTGCTGAACCAGAGCCTTCCCAAGATGGCCTCAGCCCCAG
Seq C2 exon
AGGGGCCTCTCGTGACACCCCAACCCCAGGATGGGGAATCACCACTCTCTGAGTCACCCCCTTTCTACAAGCCCAGCTTCTCCTGGGATACCTTGGCCTCCTCCTACAGCCACAGCTACACACAGACCCCCTCCACCATGCAGTCCGCCTTCCTGGAGCGCTCCGTGAGGCTGTACGGCAGCCCCCTCGTGCCCAGCACAGAGTCTCCCTTGGACTTCCGCCTCCGCTACTCTCCAGGCATGGACACTTACCACTGTGTCAAGTGCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026815-'3-4,'3-3,6-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.706 A=0.681 C2=0.258
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCTCCTGCTGTAATTCCT
R:
CGGAAGTCCAAGGGAGACTCT
Band lengths:
242-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types