MmuEX6100003 @ mm10
Exon Skipping
Gene
ENSMUSG00000026815 | Gfi1b
Description
growth factor independent 1B [Source:MGI Symbol;Acc:MGI:1276578]
Coordinates
chr2:28614755-28621945:-
Coord C1 exon
chr2:28621849-28621945
Coord A exon
chr2:28615277-28615397
Coord C2 exon
chr2:28614755-28614892
Length
121 bp
Sequences
Splice sites
3' ss Seq
TTGCCCCTCCTCCCCCGCAGGTG
3' ss Score
13.23
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GACTCATAACGTTGACCGAGCCGAGAGCAGTCCCCAGGGACAGTGTGGAGGTTCGTGGCTCTCGGGCAGAACTCAGAAGAGGGACAGCTCCCTGACG
Seq A exon
GTGTGGCGTGCACGCAGAAAAATGCCACGGTCCTTTCTAGTGAAGAGTAAGAAGGCACACACTTACCACCAGCCCCGGGCACAGGGTGATGAGCTGGTCTGGCCTCCTGCTGTAATTCCTG
Seq C2 exon
TGGCAAAAGAGCATAGCCAGAGTGCCAGCCCTCTTCTCAGCACACCGCTTCCAAGCCAGACCTTGGACTGGAACACAATCAAACAGGAGCGGGAGATGTTGCTGAACCAGAGCCTTCCCAAGATGGCCTCAGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026815_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.706 C2=0.681
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATAACGTTGACCGAGCCGAG
R:
GCTGAGGCCATCTTGGGAAG
Band lengths:
226-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types