HsaINT0068661 @ hg19
Intron Retention
Gene
ENSG00000165702 | GFI1B
Description
growth factor independent 1B transcription repressor [Source:HGNC Symbol;Acc:4238]
Coordinates
chr9:135854098-135862165:+
Coord C1 exon
chr9:135854098-135854228
Coord A exon
chr9:135854229-135862045
Coord C2 exon
chr9:135862046-135862165
Length
7817 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CCCATCCCTCCCCCTTGCAGGTG
3' ss Score
13.6
Exon sequences
Seq C1 exon
AAAAAGGAGAAGTATCTATTTGTGCAAAGAGTCACACAGTTGACAGAGTGGAGGCCAGTCCCGAGAGAGGCTTTGCAGTTCCCACCTCGGGAAGCTCCGGCAGAACCCAGGCGAGGGACAGCTCCGGACAG
Seq A exon
GTGAGTGCTGGAGGATGCGTTTCTACGCTTTTGTTTTGAAATGTGCCTGTGCGCCGCAGGTGGCTTCACAGCAGGCTCCCTGGCTCCTCCTGCGGTCCTAGGAAAGGTGAGGTGGGCTGGAAAAGCTCTGGAAGGCAAGGAGCCAAGGGAGAAACAGGGTGAGGACGTAGCCTCGTCTGAGCCACTGTGCTAGGAATTGCGCCTTTGCCGGCTGCGCAGAAACACTTTTCAAAATTTGATTTTAGGCTGACAGACGTCACCTTCGGGCACAAAGTCATACCCACAACCCAGCTGTCCTGGGGACCTGGGCAGTGCTCAGGGAGACACACTTCCAAGTGCCTGAGTTGTGTTCCCCCTCGGAGACAGTCCCAGACTTTAGGGACTTGACTAAAGTTCCTGGGACACTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTGAGACTCTGGAGCGCAGTGGTGCGATTGCACTGAAACCTCTGCCTCCCGAATTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCGCGTGTTACCACGCCTGGCTAATTTTTGTATTTTTAGTAGAGACGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCTTGACCTCAAACGATCCACCTGCCTCAGCCTCCCAAAGTGTTGGGATTACAGGCATTAGCCACTGCGCCCAGCCAAATTCCCAGGACACTTTGAGAGTCAGGCGCTCTCCCCTCCAGAGCCTACTAAGGGGAGATGACAGGGCTGCCCTCTCCCACACACTGCCCAGGCTCCAGGAACAATAGGACCGACCATGGAGAGGTACTGTTTCAGCTCGCCTTTCCCTGTGGCTGTTGTTAGCCCTTTCCACCTATTTTTGGAGAAAAAAAACCAAGTTTAAGTGTTGAGGCATCTGAGGAGACATGCTCACTCTAAAACAGGACTTGTGAAGAGGAGGTCTGCAGAATCGCCGTGGGTATGTGCCCGTGTACATTTTTCCGGGGAGAAAGTCCAGAGCTTTCACGAGTTCTTAGGGAGTAAATTCGATTACAATCTGTGGGCATGAGTCTGGTAGATATTAGAAGCCAGCTGAGCTGCACCTGACCGCCTGGACGCGCCTGCATGTTTCTTAGTAGGCAACAGGCAGAATATTTCTTCCAAGTCTAGCAAAGTGTCAAGTTTCTTGTCCTCGGAAGTATTGCAGAAGGAATTCTTTGGACAAGAAAATGCGTAATTCCCCTTGCTCTTTCTGTCAGAGTTTGGTCTTCCTGAAGAGAGTTCTTGGGGAACATTGGAGAGCTATACCTGGTTTCGGTTTGATTAATGGAATCACTCAAAACCAGCGCAGACCATTGCCCCGAAGCTTTCAGCGGGGCAGGGTAGGGTGGGTGGGAATCTTATTGGACAGTACAAGGATTTTCAAAGGCTCTGGGACCAGATGGCTCCAGATCACCCAGGGAAAACAGCCTGATCAAATGGGATTCTTCACTGTCTGTGCCACAATATCCAGACCCTTGGTTGAAACATCAGCAAACACCACCCCCTCTTAGTCTAGAGGGAGGCTTTTCGTGTGTTCCTTGCCAGGAATTCAAGCCAATGGGAGCTGCTTTAGTCTATAATATAGAGATATGCAGAAAGAGTTTCATTCACTCACTTGTCTTTTTATTTTGATAAAATACATATAACATAAAATTTCCCGTTTTAGCCATTTTCAAGCGTACCATTCAATGGTATTAAGTACACCCACATGGCTGTGCAACCATCACCACCATCCATCCACAGAACTGTTTCATCTCATAAAGCTGAAACTTCATACCTATTACACAGTAACTTCCATTCCCTTCCCCTCACCTCTGGCAACCTCTATCTATTTCTGTCTCTATGAAATTGCCTATTTTAGGGACTCATATAAGGAATCACACAGTATTTGTCCTTTTGTGATTGGCTTATTTCACTTAGCATAAATCCTTCAGGTTCATCCATGTTGTAGCATGCGCCAGCATTTCCTTCCTTTTTAAGGCCGAATAATGTTCAATCATATGTCTAGACCACATTTTGTTTGTTTGTTTGTTTGTTTGAGACAGAGTCTCTGTCACAAAGCTGGAGTGCCATGGTGCGATCTTGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGGGTAGCTGGGATTACAGGCACCCACCACCATGCCTGGCTGATTTTTGTATTTCTAGTAGAGGTGGGGTTTCGCCATTTTGGCCAGGCTTGTCTTGGAACTCCTGACCTCAGGTGATCTGCCCACCTCGGCCTCCCACAGTGCTGGGATTACAGGTGTGAGCCACTAAGTCTGGCCATAGACCACATGTTGTTTGGACATTCATCTGCCATGAAACCTGGGTTGCTTCCACTTTTTGCCTATTGTGAATAGTGCTGCTATAAACATGAGTATGCAGATATCTCTTTGAGTCTCCCCTTCCAATGATTTTGGGTCTATACCCAGAAGTAGATTCACTCACTTTTGACATTGCATTCTCTGAGCTTTGGAGGAGACATTTGAGAACTCCTTCTAAATTTCAAATAAAAATGATGATTTAGACCGGCCTGGGCAACATGGCAAAACCCCGTCTCTACAAAAAATACAAAAATTAGCCAACTGTGGTGGTGCATGCCTGTAGTCCCAGCTACTCGAGAAGCTAAGATGGGAGGATCGCTTGGGCCTGGGAGGTGGAGGTTACAGTGGGCCAAGATCAAACCACTGCACTCCAGCCCAGGTGACAGAGTGAGACTCTGTCTCAAAATAATAATAATAATGATGGTGATGATGATGATGATTACTTTCTGCTGGGGCCCCTGGGCCTGACCTGGGCTCATTTTCCCCCGACTCCTCCACGGACAAGTCTTGTTTTCCCCTTGAATCTTTTTTTTTTTTGACAGAGTCTCGCTGTGTCACCCAGGCTGGAGTGCAGTGGCGCCATCTGGGCTCACCGCAACCTCCGCCTTCTGGGTTCAAGTGATTCTCCAGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGTGCCTGCCACCACACCCAGCTAAGTTTTGTATTTTTAGTAGAGACGGGGTTTCCCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACTTCAGGTGATCCGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCACGCCCGGCCTCCCTTGAGTCTTTAAACATAAAGGAAGTCAAAAAGGTTCTCTGTAGCTGACCCTGAGAACCAGCTGAGTCTTACCCAACCCTCCCAAAAGGGGAACCCGAGTGACAAGTCTTTTAGTCAAGGTGGTTCAATCTCTCACTGAAGGTCAACGAATTCTACATGGGATTTTAGAGCAAAAGGGAAGTTTAGAAATCTCTTAGCCCAACCGTCCCTTTTAAGAGATAGGAAAACCAAGCCCCAGGTTGGTGGCTGATGCGGTCACAAGCTCCAGGACCCCAAATCAGACTCAACTCCTTGGGCAACAAAGGGGCCTCATTACAGGGACATCACAGGCCTGTTGACCCAAGTCCAACTGGAAGTTAGGGTGCTGGCTCCTGCCAGGGTGCAGGGTCGCCTGTCTTCAAGAAGCACTGACTGAGATTCTGACTCAGGGTCAGGGGGACTCTATCAGGATCGGGGGTTATGGAGTGATAACAGTGAGCCTCTTTCCGGAGGTCCGATACCATCAAGTCCTCTGTTTTATGAAGAATTCCTGAGCTTCTTTCATAATCTCTGCTCTTAGCTCCTTCTCAGAACGGAGTTCATGTCAATCAAAACCAAGTGGTTGTTAATTAACTACAGTATAGGTGATTGGTTCCTGTTTTTTCTTTAAAAAAAAAACAACTCTGCTAACAGGGGCCAAAAGGAAGTTCACCGGGTGCATTTGGCCCCTCTGTGAGCCAGAGGGCTTGGCCGTGGCGTTGGCTGTGTCACTGTCACTTGCCAAGCTCAGGGGAGAGAACACTGGGGGGAGGCAAGAAAGCGGGTGTGGGGCTCAGGGGAGATCACTAGAAGAAGCATGAGAATCACCTTCCTGAGGCTGGAGAACCCCAGAAGCCAGCCCCATCTTGCCCTGTGCCTAAGTGAAAAGTGCTTGGCCAGGGCTCATGAGCGCTAGAAAGTGTCCTTGTTGTGGGGCCCAGGGTTAGAGTCAGTTGACCTGGGTTCTCCTTAGGCCCTGAGCCCAGGAGAATACCAATGCTTCCTGAAGGGAAGTCTGTCCCTGGCCTGGCCCCACCAAGACTCTTCAGGAGCCATGTGGGTCTTTTAGGAGCCTGGAAAAGACTTGAGGGTCAGAGGGTTTGATTTTTCTCCCTCCTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTGTGGCTCTGTCACCCAGGCTGAAGTGCAGTGGTGGTGTGATCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGAACTGTAGGCAAGTGCCACCATGCCCGGCTAATTTTTGTATTTTTTGTAGAGACGAGGTTTCACTGTGTTGGCTAGGCTGGTCTCGAACTCCTGATCTTGTGATCCGTCCGCCTCGGCCTCCCAAAATGTTGGGATTACAGGTGTGAGCCACTGCACCCGGCCTGATTTTTCTCCCCTCTTGCCCCAGCACCCTGCATTTCCCTCTGTGCTGCAGGCGGTGTTCACCGGGTGCTGTGAGGACCTCTGACAGTGCTGGGTGGCACAGTGGCTTGAGAGTAAAATCCTAACAGGCCAGGAGCCCTGGGTCTGAGTCACTTTCCTCTCTGCACCTCAGTTTTCCCACCTGCAACCTGGGAAGACACTGCTTGACACGGGCACACGAGGGAGCTTCAAACTGCTGTTTTCATCCCTAGCACGTCGGCTCCACTCCCTCTGCAGAGAGAAGCCCATGCCGGGCACTGCCCAGCACTTGGCACCCATTCTGCACCGAGTAACTGCCCACCTGCTGGGCTGAAAGTCAAGAGCATGGAGGCCTGGGGCCAGACAGACCCCAGTCCTTCCCTGCTCACTCTGCCCCAGGGTCCTGAGCCCTCCAGGCTTCAGCTCCTTCTTTATAAAATGGGACAGCAGCGGGACTCAGCATCTGGATTAAGCATCAGAATTAAAGGTGTAATAAACAAGGCAGGCTAAGCAGCCCCCTGCCAGAAGGTTTGACCAGCTCCTCTTCTATCACAGAAGCCTTGGCGAGTACCTTTGGTTCTAGTTGATTTCCTCATAAATATTATGCGCAAAAAAGGATCATCTTTTGATATTTTGATAGGCAAACCATGACCCTCACAGGCCCCCTCAAAACAAAGTGCAAGGGGAACCCCACACCCCCAGTCCTCCTCCTGCTCACTGGGTCCCCTCCTCTCCCCCTAGGGTCTGGCCTCCCCATGGGCTTTCTTGAAGCGAAGAAGAGTTAAAAGCGGGAAGGAAGGGGGGTGTGGGGAGCCCTGGTGAGGGAGGGGGAGGAGGCAAGAGGAGGAAGACGTGTCCCTGGGAGATAAGGCCGTGGGCTGCCCCCGGCCCGAGCCTGTGTTCAGAGAGCCGAGAATCTGACCGCGGGAAGGGACCCCAGAGGCCTTCAAGGTCCTTTCTCCTAATTTTAGAGCTCAGAGAGTACAGGGCCTTGAGCGCGGCCCTGGCTTCTGGGAGGCTGCTGCAGCCCTTGGCACAGGGCTTACCCCGTCCTTTGAATGCACCTGCAGTGGGCTGGGTGCTGGGATGCGGGGGAGCACATGCTGAGCACCTCTCACACTCGCTCCTGATGGATAAAGGTCCTTTCTCGCTCCCCACCATCCCATGTGGTTGGATTGGGATCCCCGTTTAGCAGATATGAGCACTGAGGCTCAGTGATGAGCCTTACAGCAGGCAAGGGCTGGGCCTGAGCTTGGCCCCCTGTGCAGAGCCCCCAGTCCAAACTCTTGATGCCCCCAGGCTCTGGGCCAGGGGGAAGCAGGCCTGGGCATAGTCGGGTCCCTCTTCTGCCTGGCTGTGGTTCATCTCCTTGGGGAAGGGGTGAGTCCCTGGCCCTTTTCCAAGCTGCATTCTCTAATCTCCCACCTCCCACCCTGCTCCTGGGCCAAGGCCTTATCACCCAGGCCCTCACTGCTGTTCTGAAGCAGCTGTGATCCCTCTCCCGCCTTCTCCGGACCCTATCACCCCTGCAGCCTTGCATGGCGGCTGGCCCAAGGGGTGGGGGGGTGGGACTCCTCTGACGCCTCAGGCATGGGCCTGGTGTCGGCCTGGGTGCAGCGTGGGGGCAGAAAGGATAGAGGACCACCAGAAGATGCTCTCCAGAGTGCCCGGGGGAACCTCACAGGCTGAGTGCAGGGATGTGAACCATTCTGGGGGCCAGGCAGGGCTCTCAGCTCCAGAGGGCTCTGCAGGGGAAGCCAGGAGTCCTGGGGTGGTCAAGTTGGTCCAGCCCTGTCACTCCCTGACTCTGCCTGGGATGGTCCCTTGACTGATGTGGTCCTTGGTTTCTTCTCCCACTCCCTGACTGGTGGGGTTGGTAGTGATGCTGGGCTGCCCACGGAAGCTGGGGGCTGTTCGCCTCTTCTCCTGTGTCCATGAAGCCTCAGGCCTCCAGGTGCAGTGGAGTTGGGGGTCCTCTCAGGTCTTGAGTCCCCACACCCCACTCCTCAGAGAGAGAAAGCCCCTGTCTCTCTAGGGAACAGACTCTGGGCCAGGGCTGTGGACAAGGCGCAGCCGTGCTCTGGCGGCTGTGGCTTGCGGCTTGCAGGAGCACGTGGATTGGCAATGTCCCCTCGTTTGCTGCAGCTTCTCTGCCAGAGCCCCCAGTGATAGACACTGAACACCTGTGATGCACCTGTCAGCACTGCAAGCCTGGACATCCCCACTTACAGCAAAGGGGATAGGCCCAGAGAGGTTAAGTGTGTGTCCCAAATTGCACAGCAAGTGAACTGAGATTCTAACCCACGAACCACTGATTCCAAAACCTAAGCTCAGACCACCCGTTTCTATGGCCTCTGAAGGTGAATCTCACTGGTACCCAAATGTAGCTTTCTAGAATTGGGGTCCACTGTGTGTCACAGAGGGAGACCCCAGTCCCTGCCTTTCCTTTTCTGCTCCATTGCAGCCCAGGTCATGCCAATGGGAGCAGGCTTGTCTGAGCGTTTTCTAGGGGGCGATGCATTCATTTCCTGGTGAAGGAGCAGTGAGGGAAGTTAGGATTTGTAGCTGCCGTAACAAAATAGCACAAACAGGTGGCTTAAAACCAACAGAAATTTATTCTTTCATGGTTCTGGGATCTAGAAATCCAAAATCGAGGTGTCCGCAAAGTGGGTTCTTTCTGCAGACGCCAGGGGAGAGGGTTTCATGCCCCTCTCTGAGTTCTGGCGGCTGTCGGCACTGCCTGGCATTCTCTGGCTGATAGAAGCTCCGAGTTCTGGCGGCTGTCGGCACTGCCTGGCATTCTCTGGCTGATAGAAGTGTCACTCTCTGCTCTGTTGTCGGCACACGGCGTTCTCCCTGGGTGTCTGTGTCTCTGGGTCCAAATTTCCATCTTCTTATAAGGACACGAGTCATCTTGGATTGAGGGCCCATCCTAACCCGGAATGACCTCATCATAACTTGATTACATCTGCAAAAACACCCTATTGCTAATAAGGTCACATTCACAGGTTCTGGGTGGACATGAACTTTGGGGGCCACTGTTCAACCCAGTATAGCTGGTGTTTTATCTCAGGAGGAGGTTCTGAGATATGGAGGGGTATTGTTCTCTTGTCCTTCCTAACCGCTCCCATCCCTCCCCCTTGCAG
Seq C2 exon
GTGTGGGGTGCACACTGAAAATGCCACGCTCCTTCCTGGTGAAGAGCAAGAAGGCTCACACCTACCACCAGCCCCGTGTGCAGGAAGATGAACCGCTCTGGCCTCCTGCCCTTACCCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165702-GFI1B:NM_001135031:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.794
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)