RnoINT0064790 @ rn6
Intron Retention
Gene
ENSRNOG00000011353 | Gfi1b
Description
growth factor independent 1B transcriptional repressor [Source:RGD Symbol;Acc:1311727]
Coordinates
chr3:7196636-7203420:-
Coord C1 exon
chr3:7203311-7203420
Coord A exon
chr3:7196760-7203310
Coord C2 exon
chr3:7196636-7196759
Length
6551 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
TTCCCTCCCATCCCCCACAGGTG
3' ss Score
12.96
Exon sequences
Seq C1 exon
GTCTGTTTGTGCAGAGACTCATAAAGTTGACAGAGCTGAGAGCAGTCAGCGTGGAGGTTCTCGGCTCTCAGGACTCGGGCAGAACTCAGGAGAGGGACAGCTCCCTGACG
Seq A exon
GTGAGTGCTGCCAGACCGGTGCCGGCTGGGCTCCGCTGAAGAGTTCCTGTCCTGGTGCCGAAGGCAGGAAGGGTATCTGCTTCCCTTTATGGTGAAAGGAAGAATACTGTGATAGTCTCTCTTCTGGACCCAGTGCTCATCACCAGGGGAGAAAAGGAGGAAGGAACACGCGCCAGACTGAGATGCCCCACGATAGCGCAGGAATCGCGTTTTCCCTCCTGTGAATTTTGTAGACGGTTACGCTTCATTTTCACCCAGATACAATCTCTCTCTCCCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAATCTCTCTCTCTCTCTCTCTCCACACACACACACACACACACACACACACACACACACACACACACACACACGGCACTTTTCTAGGGGCACCAGAGGGACACAAATCGGTGTCTCCCTGAGCCAGAACTGCCCTCTGCCAGGAACTCAGACGGAATTGGTGTCTCTGACAACCTCAAAAGTTCCTGGAAGCACCGGGGAGTCAGACACCCTCTCCTAAGGAATTCACTGAAGGGGAGTGACAAGGTGAGGCGGAGCAGCCTCTAGGAAGCACAGGATTATGGGGGGGGGGGGGGGGGAGACGGTGCCAGGGGTTCTTGGCTCTTTTTACCTAGAGGAAAAGGTGAGTTTGAGTGGTGGGTTTCTTAGAGACCAGGGCTCATTGAAGCGATGCCCACAGATGCTGTGGTCTGTGTGGGTCCTGAGAAAGCCAGCATCTTTGTGAGACTACTGTGGGGAAAGTCAAGGCACCGCTGGCTGTGGGGTCCAGCAGCCTGGGTGCTGGTAGAGTTGAGCCTACCCACCTGTGCTCCTCCAAGTCCTGCAAAGTCCTCCCTCAGGAGAGAGGTAACGTCTTGATTTAGGGGGTCAACCTGTAGAAAGTTTGGGAGAGTCAAGCAGTTCTGGATGATTTCGGTCTGACTGATGGAATCACCCCAGTGGTAATCGCCATTCCTGGCACCTCAGAAAAGGTGGATGCAGGTCCCCCTAGAGGTTCTGGGGAGCAGATCGCTCAAGGTCTCCCTTCACTGGGACCCAAAGCACACTCCCAGGCAGAAATAGCAGGAGGCTCCTACGTTTGAAGGTGTTTGTATTGGTTCCTTTCTGGTGGCAATCCCAGCCACGGCGGGGTAGGGGTTGGGATGCTCTGCTCTTGGTATAGACAAGTGCAGACAATGTTTTGTTTGTTTTGTTTCCATCAAGGTAAAACATGTCCATAAAATTGACCATTTTTTTTTGCTTTTGAGTTGCGTGCTGTTCTTGTGTGTGGGCATGGGATTCAGAGTCTACCACAGACGTACACTCCCAGGTCCCCAACTCCTTCCTTCTCTCCTTTTACACTATGTAGCTTTTTTTTTTTCTTTTTTTCGGAGCTGGGGACTGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAAACCCCACTATATAGCTTTTAAAAAGACCCTTAATTTCCGCTCCCACCTCCTGTCTTGAGCTGCATCTCCAGCCCCTTTCTTCTTTTACTTCATTATTTTTTAATCTCTCCTTTCTGTTTTTAACTTAAGATTACTATCATTAACTAGGCCTGGAGACGCACGCCTATAGCCTTAGCACTTGGGAGACAGAGACAGGTGGAGCTCTGTGCGTTTGAGGCTAGCCTGGTCTGCACGGAGAGCTCCAGAATAGCTAGCGTCTCTTAGAGATACTCTGCCTCAGAAGAACTACAAAAAGTATTGTTGTTTGTTTGTGTGTGTGTAAGAGAGATGCAGGGCGCACATGCCTTGGAAGACATGTGGAGGTCAGAGAACAACTTTTGGAGTCCATTTTCCTTCTGCCCTGTGGGTTCTCAGGACAATACAAGTCATCAGGCCTGTGTGACAAGTGTTCCACTCATTAAGATAGCTCACTGACCCACTTTCTCCTCTGTTTGACCAGGCTGGCCCAGAACTCATGGGCTCAAGCAATCCTCCTGACTTCTTCCCAAGTATCCAGGACTCCAGATGCTTGCCCCATATGCCGAGCTCATCATAAGAGCTGGGGAGCAGATCCATTAGCAATTGAGTAGATTCATCTTGTTCAACTATGGTCACCACTGATCCCCAAGGCCGTGTCCATTTGTGAAACTCAGACGCCACACCTATTAACCAATTCTGTTCCTCTGCCCCAGCCCCGCTAACCTCAAATCTACTCCAGTCTGTGAACTTGCCTATTTTGCACAACTAGATATTTGGCCTTCTGTCGCTAGCTTATCTTGCTCCCCATGTTTGAGGGGTTCATCATGCCACGTATGCTGGAATTTCCTTCCATCGGAAGTCTGAATCCTATTGTGTGCTTTGGCCTGGCTCTCCCTTTGCTTATCCATCCTGCCTAGGCGGACTCCTGCACCTCTCAGCTCTTGAGGATGGTGTTGCTGTGGATGTCGATGGTCAGAGTCTCTGAACTCTGTGCTTCTCTGTGCTTTGGTGTATGCCAGAGGTCATTGCTGACTTTATGTGCTTATTGGTGGTGCTGGGGATTGAACCCTGGGCCTCGCACATGTGGGCCACTGACTTGAGGCCCCCTAAGGTCACCCAGGCTCCTGGCTGTGACTCCGTGATGTGACTCTGCAGCTTGTTTGTTACCTCCCTCCCTTCTGTCCTTACACATAAGGAAGTCCAAAGGGTCCCCTGTAGCTGACCCTGAGAATCAACCCAGTCTTGCCCAACCCTCCTGAAAAGGGAACCTAACTGGCCAGTGTCTCAGGCAAGGTAGGTCAGTCCCCAGCTGAAGGTCAGCAGATTGTACACGGGATTTTAGAGTAAAGGGGAAGTTTAGAAATCTCTCAGCCCAACCGTCTCCTCCGAGAGATAGGAAAACCAAACCCAGGTTAGCGGTGCACGCGGTCACAGAATCAGACTCATCCCCCAGGGGCTGCACAAGATGCCTGGAGTCAGGAAAACCTGGCGAGCCCACTATGCTCACAACCTGGGAGTACAGGATGCTACAGTCCTCCAGGCAGCCCCAGGATGGAAGGTTTATAAAGGATCCTGACAAGGGGCCTCTTTCCGGTGTCCAGATACCATCACTCTCTGTTTATGAAGAAATCCCAGTGTCTTTCACAATCTCTGCCTGAGCTCTTTCTCAGAATGGTCCATGTGAATCAAAACTGAGTGGTTGCTAATTAACTACATTACAGGTAATGGTTCCTCTTTCTTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCAGCTAACAAAGACCAAAAGGAAATTCTCTGGGTACAGTTGGCTACTGTAGGCTTGGGGGTCTGACGAAGTGTCAGCTATCCTGCCCTAGAAGGGCAAGGATAGAGCTAAGGCAACCCAATGGGAGGAAGCCAGAAACCCAGGACCTCTTTCTTCCTGTTGTAAGCATAATGCATTCAGTAAGTGCTTATGAATATAGGAGGTGCTGATCCTGTGCTGCTCTAGGTTTGGGTCAGTGACCTAGCGTCGTCTTTAACTGGACCACGGGCAAAACTGCCTTTAAGGAAATCTGTTCTTTTCTACTTTCCACGTGACGCTGTTAGGACCCTGTGTGGAATCTTTGAGGATCAGGGGAAAAAGACCCCTTGTTCCTAGCTCCCACTTTCTTTTGATACTATGATCTACACCAGTGGCTACTGTGAGGAGCAGAGATCGGTGTGGTGGGGGTTAGAGAGGTGGGTCAGGAATCAAATCCAAGCAGGACAGTAGCCCTGGGCCTGGCTCTGTCCTGACCTCTGAGTCAGCATCCTCTCTAAGCCTTGAGATCCCCACCTGCAACCTGAGGACACTTCCTACTTCCCTGTACTCAATGCACGAGTACAGCAGCCACCATGGCTTGTTTTCCTCCTTGATGTACTGCGTAGTGACTGTCTCAGTGAGGACCTGACATGAAAGGCCTGGAATAGCCTGTGGCACATGGACCACGCTGAACAAATAACCTTTGTCCCAGTGCTGTGAGTATGGAGGTCCTGGGCCTAGATATATGCATGCACTCTCCTTCCCCCTGCTCAGGATTAAGAGTCCCTCAAATGAAGGGTTGGGGAGATTTGGGGACTGGGGTGGGAGGGAGAAGGCCAGGAAGGGAGGGGGCAGGGGAGGAAGGCTGGCCCTGGAAGATAAGGTCGTGGCCGCTGTGTGTACCAGAATGAGCAGAGGCCCTTCCAATCCTTTGTTTAGAGAACTAAGAATCTGTCAGTGGAAGAGACCCAAGAGGCCAAGTCCCATCCTTCATTTTAGAGTTCAGAGAACGGAGGGCATTGAACTTATGGCAGCTCTCTGGTTTATCCTTAGAGGGCACCTGCTGGATTGAGCCTAGCCTCCCTCCTGGCCCCTTCAGCTTTTCCTCAGCCGGTGGAGAGGCCATGTGATAGCTCAGCCTAGGTGTCTGCCATGCACCTTACAAGTTCCCAACAATGACAGACATTGAATCAGGCCCCCTCCTTAGTGATCTAAATATAGGCCTCACAGCAAGAAGTGCTGGACCTGTCTACACTGCACAGAGCCCCAACCACCGATACTCCCCAGCAGGCCTCTGGGCCATAGGGCAAGTGGACTTAAGGCCTCTCCTGCCTGGTTTTGGTTCACCCCCTGGGACAGAGGTGACTCAAGCACCCTTGCCACAAGGCTAAGTAAACTCCAAGCTGTCTTTCCTAATCTTGCCTCCATCCTGGTCTGAGCTGAGGTCTTATCACCTAGCCTTCACTGTTGTTCAGAGGCAGCCAAATCCTTTTTCCCGCCTTTGCTGGGCATATCACAGATGCAGCCTTCGGTGAGTGGCCGGTCCTGGGTGGGGCTGGGAGGAGTCTGAGCTTTGGCCTGAACAGTCTGGAGTATGGTGAGGATAAAGGACACCAAGGGGCCTCTCTGTCTCCCAGGACCGTGAGAACACAGCACAGACTAGGACAGGGATAGGAGTCACTAGTGGGAGAGCAACCACATGCTGTCTTAGAGGACTCGGCAGGAGACATCTAGGGAGGTCAGCATGGTTCCCGCCTTATAAACTGGGTGGATCCTTTGGCTCATTCGGACCTCCAGTTCTCTCCCAGTCCCTGACTAAGAAGTTAAATGATGATGTCCACCACTGGAGTTGACGGACATTCACCTCTCCGTGTCCATCCACAAGGAAACTGAACCACCAGATGAAGTGGATGGGTCTCCTCAGGCTTCTTTCCACAGTTAACAGACAGAAATCCCCACCATTTCTGGAGAGCCGGCTGCAGGCTTAGGCTCCCACCTGCAGGGCAATACCGGCTTCAATTAAGTCTCTACTTGCCTCACTAGCCTCAAGCACCTTTAAGCACTGCCCCACCCCCTCAATCCCTGCTACGCATGGGCAGTGAGAACCTGGGTTGTTCGCCAGCATTCCAGGCTGGATAGCACAGCACACCTTAAAGTAAAGGAAACTGGCCCGGAGAAGTGAGGAGTCTGCCCAGATTGAACAACGGGCAAGTTGAGGAACTCCCCTCAGGAGCTTCTTTGTGGGGGGGGAGGTATTTTGTTGTTTGTTTGCTTTGCTCTGTTGAGACAGTCTCACTATACTTGTCCTGGTTGGCCTGGAACATGCTCTATAGACCAGACTGACCCTGAACTCAGGGAGATCCACCTGCCTCTGCCTCCCGAGTGCTGGGACTAAAGCCAGGCACCACCACACCTGGCTTCTCCATGAGCTTTTAATCTAAAAAATCTAAGCTCAGGATGTGTAGTCTCGTAAGCGTGTCAATCTGGTTCTCAAGAACAACTTTTTAAATTTGTTGTCTGAGGATGGGTTTCAGATAGCCCAGGCTGGCCCTGAACTCATATCTTGCTGAGGATGACTTTGAACTCTTGCATCCCTGCCCCCACTTCCCAGGAGCTGGGGTTATAAAATTGTGCCACCGTAACTGGTTTTCTCCAGTGCTGGGGATGTAGCACGTAGGACTCCACCGACTGAGCTGCACCCCAGTCCCTCAAGTACAACTAACTGGGGTCCGCATGTGCCTGCTTCAGGGGTTCCAGGTCTATCTGTCCTCCCTTCTCTTTCCCAACACAGTCCAGGCTGACTCAAGTTTCTAAGGATGAGTATACTCTGCCTGTGACTAATTCGTCATTCTGGGGGGAGGGGCACATGGTCAAAGTCAAGGTGTCGGTATGTTTGGTTCCTTCTGGAAGTTCCTAGAAAAATCAGTTCATGGATCTCTCTGATAACGGGAAGCAGCCCTTAGCGTCCTGAATCTTAGAGGCATGTCTCTAATCCCCACTTCTGATGCACAAGCAGCTCTCCCCACGCCCAGCCCACCCAGGGGACACTGGTCATTTGGGGAGCAAGGCCAATCTTCGGGCACATCCTAACTTGATGTGATATTCACAGGTGCCAGGTGGATGTAAACCTTTGGGGAACATTATACAAACCAGCATGGGATAGCGTGTCATTGTTCCAAAGGAATGATACTGGTCGATCTTAGCCACTCCCATTCCCTCCCATCCCCCACAG
Seq C2 exon
GTGCGGAGCACACTCTGAAAAAAAATGCCGCGGTCCTTTCTAGTGAAGAGTAAGAAGGCGCACACCTACCACCAGCCCCGAGCACAGGGCGATGACCTGGTCTGGCCTCCTGCCGTAATTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011353:ENSRNOT00000015236:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.735
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]