MmuINT0071350 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr9:105783753-105785017:-
Coord C1 exon
chr9:105784924-105785017
Coord A exon
chr9:105784410-105784923
Coord C2 exon
chr9:105783753-105784409
Length
514 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
ATCTCTCTGTGCATTTTTAGACA
3' ss Score
8.4
Exon sequences
Seq C1 exon
TTTGATGACACTGGGACATTTCAGGTGATTCCAGTCCCCCCAGTTGGAGATTATGAGCCACTGGAGAAGCTTCGGCGCTGCACACTTTGCTATG
Seq A exon
GTAAGATCGATGGGAACAGCTGACTGTGCAGGAGGCTAAATGCTTTCCCAGTGAGCTCTTGGATTGGGCTTTAGAGAGAGGTTTCTGTTTATGACGGTAGGTTTTATTTTCAACTTTCCAGTTTTGGAAGGTGCACTATGTCAGGATTCCAGTCTTTAGTGTTTATAGAGTTTCTGTGGAATGTGAAAACTGGTTTTGAAAATTACCTGACTGGTGAAGTCTCTCCTGGAACAGTGCTATAGTTTGTATCAAGAGTCTCTAAACTACTGAAAATACTTTCTATGCGAGTTTGGGCATGATTGTGAATTTCAGACACACACCACCTAAATCTGTTTTCAACAGAGACCCCCCTGTCATTAGTTGCTAGTTGCCACAATTGTCCTGGAACATTGGCCGTTTCTTGTTATTTTAAGTGTGAAATAGAAGCATTGATAAGTTCATTATTTCTTGGAAGCTCTCAGTGTCTTGTGCTGCTGCTGATTCCATGATGTATCATCTCTCTGTGCATTTTTAG
Seq C2 exon
ACAAGTGTTTTCCAAACACCTGTGCAGAAGAGCCTTTCTTTCCTGAGAATTCCTACATGGATGTTGCATTCCTCTTAGACAATTCCAAAAACATCGCCAGCGATGACTTCCAAGCCGTGAAAGCGCTGGTGAGCTCAGTGATTGACAGCTTCCACATCACTTCAAACCCTTCAGCCTCAGAGTCTGGTGACAGGGTTGCTTTGCTGAGCTATTCTCCCTCAGAGAGCTCCAGAAGGAAGGGCAGGGTGAAGACAGAGTTTGCCTTTACAACCTACGACAACCAATCAATCATGAAGAACTACATCTACACTTCCCTTCAACAGCTCAATGGAGATGCTACTATTGGCCTTGCCCTACAGTGGGCCATGGAAGGTCTCTTCCTGGGAACCCCCAATCCAAGAAAACACAAGGTCATCATTGTGATTTCAGCTGGAGAAAACCATGAGGAGAAGGAATTTGTGAAGACGGTGGCTTTGAGGGCCAAATGTCAAGGCTATGTCGTATTTGTGATATCTCTGGGCTCCACACAAAGAGATGAGATGGAAGAATTAGCCAGCTACCCACTCGATCACCATCTGATACAGCTTGGGAGAATGTACAAGCCAGATCTGAATTATATTGTGAAATTTCTGAAGCCCTTTATATACTCGGTCAGAC
VastDB Features
Vast-tools module Information
Secondary ID
-Gm7455:NM_001167923:34
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACACTGGGACATTTCAGGTG
R:
TCTGTCTTCACCCTGCCCTTC
Band lengths:
345-859
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: