MmuINT0071689 @ mm9
Intron Retention
Gene
ENSMUSG00000036246 | Gmip
Description
Gem-interacting protein [Source:MGI Symbol;Acc:MGI:1926066]
Coordinates
chr8:72340108-72340824:+
Coord C1 exon
chr8:72340108-72340262
Coord A exon
chr8:72340263-72340635
Coord C2 exon
chr8:72340636-72340824
Length
373 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGG
5' ss Score
4.48
3' ss Seq
TGACCTCCCCCCTCCTCCAGTGC
3' ss Score
10.43
Exon sequences
Seq C1 exon
ATCTGGGGGATGGGATAGAGAATGGAGTAGGCAGCCCGTTCAGGAAGTGGACACTGTCCACAGCTGCTCAAACCCACCGACTGCGGCGGCTGCGGGGCCCAGCCAAGTGCAGAGAATGTGAAGCCTTCATGGTCAGCGGGACAGAATGTGAAGAG
Seq A exon
GTGTGGCCTAGACTGGGGACCTAATGACCTTGGCTGACTCTCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTCCCTCAGTCTCAGTGTTCATTTGTGTGTGTCTGTGGCAGAGGCAGGGTGTGCATTAGTGTCATGCTGTGAGTGAGTGTTAGAGGAGAGTTTAAAGGAGCCATTTCTCTTCTTCCTCCATGTGAGCCCTGGGAGTCAAACCCAGGTCATCAGGTTTGGCAGCAAGCACCTTTACCTGCCGAACCATCTCTTTGGTCTCTTAAGCATCCTCTATTCCCTGGCTTTCTTGCTGACCTCCTGATAACCTTCCTGTCTCCAGCTGACCTCCTAACCCTGTGACCTCCCCCCTCCTCCAG
Seq C2 exon
TGCTTTTTGACCTGTCACAAGCGCTGCCTGGAGACCCTCCTCATCCTTTGTGGACACCGGCGGCTTCCGGCCCGGATGTCCCTCTTTGGGGTTGACTTCCTACAGCTCCCCAGAGATTTCCCTGAGGAGGTTCCCTTTGTGATTACCAGATGCACAGCTGAGATAGAGCACCGTGCCCTGGGCTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036246-Gmip:NM_198101:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.173 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PU(56.2=51.9)
A:
NA
C2:
PF0013017=C1_1=PD(39.6=30.2),PF0062022=RhoGAP=PU(11.0=28.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGGATGGGATAGAGAATGG
R:
ACGGTGCTCTATCTCAGCTGT
Band lengths:
326-699
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: