RnoINT0065854 @ rn6
Intron Retention
Gene
ENSRNOG00000027257 | Gmip
Description
Gem-interacting protein [Source:RGD Symbol;Acc:1565577]
Coordinates
chr16:21354548-21355486:-
Coord C1 exon
chr16:21355332-21355486
Coord A exon
chr16:21354737-21355331
Coord C2 exon
chr16:21354548-21354736
Length
595 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGG
5' ss Score
4.48
3' ss Seq
TGACCTACCCCCTCCCCCAGTGC
3' ss Score
8.47
Exon sequences
Seq C1 exon
ATCTGGGGGATGGGATGGAGAATGGAACAGGCAGCCCCTTCAGGAAGTGGACACTGTCTACAGCCGCTCAAACCCACCGGCTACGGCGACTGCGGGGCCCAGCCAAGTGCAGAGAATGTGAAGCCTTCATGGTCAGCGGGACAGAGTGTGAAGAG
Seq A exon
GTGTGGCCTAGACTAGGGACCTAATGACCTCTGCTCACTTTCACTAGACACACTGACCCAAGAGCCCTACGGCCTTTTTGCTCTAGGGCTTGCCTTTGTCTGAAGATCTCTCTCTCTCTCTGTGTCTCTCTCTGTCTCTCATTCTCTCTGTCTCTTGTTCTCTCGTTCTTTTTTTCTCTCTCTCGTTCTCTCTCTGTCTTTCTCTCGTTCTCTCTCTCTCATTCTCTCTTTCCTTCTCTCTCTGTCTCTCTCTCATTCTCTCTGTGTCTTTCTGTGTCTCTCTGTCTGTCTGTCTCTCTGTCTCTCTCTCTCTCCCCTCCCTCTCAACCTCAACTTCAGTGTTCATTTGTGTGTGTCTGTGATGTTGGTGTGGTGCATTAGTGTCATGGCGTGTGTGAGTGTTAGAGTTAGTTTAAAGGAGTCATTTCTCTCCTTCCTCCGTGTGAGCCCTGGGAATCAAACTCAGGATGTCAGATTTGGCAGCAAGCACCTTTACTCCCTGGCTTTCTTGATGCCCTCCTCATGCCCTGCTGACCTCCTGATAACCTTCTTGTCTTTTTGAACTCCTAACCCTGTGACCTACCCCCTCCCCCAG
Seq C2 exon
TGCTTTTTGACCTGTCACAAGCGCTGCCTGGAGACCCTCCTCATCCTTTGTGGACACCAGCGGCTTCCAGCCCGGATGCCTCTCTTTGGGGTTGACTTCCTACAGCTCCCCAGAGATTTCCCTGAGGAGGTGCCCTTTGTGGTTACCAGATGCACAGCTGAGATAGAGCACCGTGCCCTGGGCTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027257:ENSRNOT00000039607:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.327 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PU(56.2=51.9)
A:
NA
C2:
PF0013017=C1_1=PD(39.6=30.2),PF0062022=RhoGAP=PU(11.0=28.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGGGATGGGATGGAGAAT
R:
ACGGTGCTCTATCTCAGCTGT
Band lengths:
327-922
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]