MmuINT0072239 @ mm9
Intron Retention
Gene
ENSMUSG00000015341 | Golga7
Description
golgi autoantigen, golgin subfamily a, 7 [Source:MGI Symbol;Acc:MGI:1931029]
Coordinates
chr8:24356335-24360873:-
Coord C1 exon
chr8:24360721-24360873
Coord A exon
chr8:24356437-24360720
Coord C2 exon
chr8:24356335-24356436
Length
4284 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
TGTGGTGTTTCCTCTGGCAGGTC
3' ss Score
10.84
Exon sequences
Seq C1 exon
ATTGACAGACAGCAGTTTGAAGAAACAGTTCGAACTCTAAATAATCTTTATGCAGAAGCAGAGAAACTTGGGGGCCAGTCGTATCTTGAAGGCTGTTTGGCTTGTTTAACAGCATACACCATCTTCTTATGCATGGAAACTCATTATGAGAAG
Seq A exon
GTATGGCTACATTTGTGTTCAGTAAAATCTCTAAATACCATGAAAGAAGATAAGTCTCTACATATTAACAGTTGCTTTAAACTTGAGAAACCTCTATATAATTCAGATTTTGTTATTGCCCTTACTGTCCAGAGCACACAGAAGTGGGTCCTAAGTGTTTGTGAAATAGGTCAGCATGTACAAGTCTGCTTGGGGTGACAGGGCAGAGTTCAGACTCTACATGCAAAGTTAGTGCGGAAACTCAGTATGGCTCCATGTCTCCAGCTCTTTTGAGTCTTTTTTCTTCCCCCCTAAAGTTTCCGTTTTCGGTCATAGCCTCCAACTTGAGTCCTTCTCTCTGCAGCTGCCTGCCAGCTGGAGGGTTGCTGTTCGTCAGCTTGTAATGCTGAGAATGGAAACTCGCATCTCCCCATCCTGTTCAGTAGCCCCCCTCTCTGACTGCGAGACAGGGAGCTGGAGCATAGCTGGGAAGGGCTGCGCTGTTTTCAGTTGTCCCCTTTGTTATCGTGTCTCTGGCGATGCTCCGGCTTGCTCCTAGCCTGTCCAGTGCTGTCCTAACGCATCTCTCCTTGCTCTTTGCTTTCCAGCTCGCTTCCCACTGTCTTCAGAAAGCACAGCCTTACTTCCTCTGCCACTCCTAAGTCCTGACCTCCTCCTTTCCCCAGTTACGACTGGATCAGGAAAGATCCCCTGAAGCTGATGTCCAGTTGCCTCTCTAGCTCCATCTCCCACACCATTCCTCCATGTGTTTCTGCAGACAGGCAGCTGGATTAGAAGTGTAGATCTTATCTCTATAGCAGCAGCCACTCAGATTTCACGCAGAGCACAGATATCAGAAAGCAATGATTCTAAGTAGGCTTTGGGTGTGTGGGAAAAGAGCCCGAGAGAGGGAATGGTCGCACAAGTGAGGGAGCTCCACAGAAGCCCGAGCTGAGTCTGCTCGGATTAGGAGCGTGGCAGTTTGGGAGGAAGGAAAGGAATGATTTCAAAGGATATGCTGATGCTAGAACCAGGATTCAGGGAGGAGCCAACTTTAACAAGAAGAGGAAGTTGAACTCCCATAGAAAGAACATGGCCATCCAGCCACGCTCTTACGGAAGCATGTTTCTGGTGGAGTTACATCCTTTGGAGTGACAGTTGTAAGAGGGAAGTAGTATTGAGTACCCGACAAGTGATTCTGGCTATAGGATCTTGGATACATTCATTTCTTGGAAATCTCTCAACTATAAAATAGATCTTGGAATTAATATATAGCCTTGCATATAGTAAATATTTAATAAATATTCCCTTGAAGTAGATTTTAAAAATATTTTTATGTGTTTATATATTATATTGCACATATACACATGCCAGGGCACCAGTAGAGACCAGAGAACAACCTCGGGCCAGGCCCCTGTCCTCCGCTGTGTCTGACTGAGACTGGCTGGCTCTCTTTCTGTTGTTTGCCTCTGTGTTGTCCCAGGTAGCTGGCACTCAAGCCCCCTGTCTCCCGTGGGCGTGCTGGACCATAGATGCTTGTGCTTCTGTTTCCAGCTTCTGCATGCGCTCCGGGGACCTCAGCTCAGGTCACCCCATCCCATGTCCGCTAGTTCTTTATGAAAAGGCAAGAATGAATCCTTTAGACACCAGTGTTTTAAACATTAAGATTTCTTATTCTACAAAGAGTAAACCAGATATAATGTTTACACTTTATCATGTGGGTTAAATTTCTTAAAATTGCCAATAATCCTTTTAAAGCTTGCTTGAACAATTATCCACTTTGTTACTTGTAATATGCTATTTATTGATTTTTTTTTTCAGTAAAGATAAAGAGGATAGTGTTAGTTCTTAACAATTGGGCTTGGAGGAGGTTTTCCTCACTGTCTGCTTTGTTTATCAACTAGAATGCATCCCTTCTGCCTGGGCTGTAATTAGAACACTTAAGTCTTTTCTGAAAATGCCAAGGCTCTGTCCTCAGCCTGGCTCGTGCACCTTTCTTGCAGCCCGTCTAGAGCCCCGTTCCCGGCAGGGACAGTTGTCTGTTCTGGAGGTGTCATAATGGTTCACTCTGTACTCTAGGTGAGGTTGTAGTGGGTGTTTGGAAACAAGGTCATTTCGTTTAATACTTTGGTTTGTTTGACATTGCTTTGCACTGTAAGAGCCGGTGAGATGGCTCAGTGGATAGAGGAGCTTATGTGTAGGCCTGATGCTCTGAGTCTGAGCCCTGGATTCTGCAGGGTGCCTGGAGAGAAGTGACTCCCGATAACTGTGCTCTGTCCTTCACACACATGCCCTGCCTCGGGCACACACTCATACACACATAGACATGAAATGTTAATTTAAGTATGATTAAAATGTCATCTGAACGTCTTTGGGGACAGAAGTGTCAGGTGCAGTTTGGAATAGCTGCCCAAATGAACTCTAGGGCATTACCAGAGTGGAGTTACTAGGAATGGAGAGTCTAGAAACAACTTTTATTATTTTCTCCAAAATAAGGATTTGGAATTTTCCTTTTAGAGAGGGAGGGAGTAAAGGGGGAGACAGGAGAGAGAATGAGAATGGCTCATTTGTTTCTGAACTAATAGCCAGATGCACATAAATGGTTCTAAAATTTAAACAGGAACTTTGCCCAATAAAGTTAGGCTTAAATCAAATAAAAGGAATGTCATTCTTGCTAATGACCTGTGTCCAAGAGGAAAGCTGTTTTAAAGCAGCCATTCCTAAAGCCATCCATGCATCCATGATGTGTGTCCACCACTGCTCTGGGGCTGAGGCAGACATGGTCTCGGGTTTCTCATTCTGGTGCCCAAGGAAAGGAAGTTGGAAAGATGACTGAAAGTCCTGAGCTGAGCCTGCTTACGGGCTCCTTCCTTCCACTTGTTAATTTAGGGTTATTGACAAACTGGGAAGATAAAGCCTGAGGGGTTTGCTCATAATGACCAGGAATAGTTCAGATTCTTCTAAGCTGAAAATAAGACACTGATGCTCACATTGCTTCAGGTAATTAGACTTCAAAAATTGTCATTTTTAGAAATACTGTTTTTAATTCACTGAAGAACCATGTAGATTGCTCTTTCAATAATATCCATTCACACCAGACTCTAAATAGCATATACATAAATAGTTATTTATTTCCTTTCAATAAGAAAACTAATCAAACCTCATAGAGCTTTGTATTTTAAGATAGTTTACACTAAAATATCTCAGCTGTAACATCTCCCTCCTTCATTGCCTATCCTGTATGTTTGTCTGTACTCGTATCCAGTGCTCAGCGTGGGGCACATCAGTGCCCTTAGTGGACGCCCGACATGCAGTGATGCTTTGTGTTCCTACATTGCTTTTCCTCTCTCTGTTGTGAGCAAGTTTGTACACTCATCATTTTCTCACAGGGAAAGTCTAAGGAAGTGCTGGGTAACTTAGCCGTCCTCTGGAGTGAGGCTCTGCTGACTGGAACCTGAAGTAGAGCATGGAGCCCCTGACGGCAGAGAACACCGCTGAGATACTTTCTCACACTGTCGGAACCGCCCTTAGTAAAGCTGACGATTTGGCTGTTTCTCAAAGTTCCTTTGTGTCCTATCTGGGTTTTGTCTACATTTGTTTTGACTTTTACAAGCTTAATACTAAATTTATAATTTGAAGTTCCTGTCTAGGAAGTAAGAGCAAAACTACGGCGTATCAGTGTATGCAAACATAGAGATGATTCGAGACATCTGTGCCCCGAGGCTGCCCCAGCACTGATATCTGTGTGCTCTCCACATGGAATGAGCATCCCAGCAGAGTGACAGAGCTCCCTTTTGTTACAGACCAAGCCATTACTTGAAATGCTGAAAACACACAAAGGGAGAAAAGATAGTTCTTACACAGGAGACCGAGAGTGAGCCTCACTTGAGAAGAGGCCGTCTTAACTGATGGCAGCTTATGGATAGTAGGAGATGGACGTGTGTGTAAGCAGCTTAGTCCCTGTAGCAGGGCAGAGGTGAGGGGAAGGGTGGCTTCTCACTGAATGTGTGTGTGTTTGCACTGTCCTGCGCTCCAGCACAGTACACAGTGTGTCCCGTGTACAGCTGATAACTGTGTCCCGTGTACAGCTGATAACTGTGTCCTGTGTACAGCTGATAACTGTATCCTGTGTACAGCTGATAACTGTATCCTGTGTATAGCTGACAGCAGCCAGGTAACCCAGTCTCTTGTTTGCTTTACAGAAATCAACATGACTTGCATTGAAAGCCAACTCACTGAATATTTTGAGATCTAGCTAACAGGTCAGATGGAATGTGTTAAAAGCTGTGGTGTTTCCTCTGGCAG
Seq C2 exon
GTCTTGAAGAAAGTCTCCAAATACATTCAAGAACAGAATGAGAAGATATATGCTCCCCAAGGCCTCCTCCTAACAGACCCCATTGAGAGAGGACTTCGAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015341-Golga7:NM_020585:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102564=Erf4=FE(43.5=100)
A:
NA
C2:
PF102564=Erf4=FE(28.7=100)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: