BtaINT0067904 @ bosTau6
Intron Retention
Gene
ENSBTAG00000027626 | GOLGA7
Description
Bos taurus golgin A7 (GOLGA7), mRNA. [Source:RefSeq mRNA;Acc:NM_001035484]
Coordinates
chr27:36113770-36120116:+
Coord C1 exon
chr27:36113770-36113922
Coord A exon
chr27:36113923-36120014
Coord C2 exon
chr27:36120015-36120116
Length
6092 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
TGTTGTTTCTCTTTGGTCAGGTC
3' ss Score
8.34
Exon sequences
Seq C1 exon
ATTGATCGGCAGCAGTTTGAAGAAACAGTTCGGACCCTAAATAACCTTTACGCCGAGGCCGAGAAGCTTGGGGGCCAGTCGTATCTGGAAGGCTGCCTGGCTTGTCTAACGGCGTACACCATCTTCCTGTGCATGGAAACTCATTATGAGAAG
Seq A exon
GTAAGCCTGCCCATGTTTTCCCAATCTCTTACAATCATTTAAAAAAAAAAAAAATGTGGGTTTGTTACAGGTTATGTTTGCATGGTGACACTTGCTATAAAATTTAAAGGGCCTTTTATAATAATAATAATTCAGATTTTATTGTTGCCTCTATGACCAGACACATAGAAGAGTGCTGAGTTTTTATTTCCCCAAATGTGTACCCTCCATTTCCTCCTCCCACCTGAGTGCTTGTCTCCCCTTTGAACTGTCTGCTGGACCCAGAGCTGCTGGCTTCTCAACTTAGGGGTCTGAAAGTCAAGCCTCACCTCCCCACTTGGTTCAGCGGCACCCTGTCTTTTTCACCCAGCATCTTCAGAGGGTCAAGAAGAGGGAAATTGTACCAGTAGTCAGACCGAGCTGTCTTCCATTTCCCCATTCATTAACTTTATGACACCCTCTGCCACCCCCTGATTTATGCCCTTGTGACATCTCTCCTAGACCAACACCACAGCCACAGAGCCTCTTTCCTGCCTTTCTCTTGCATTTCCAAACAGCTGTTGTGTCGTGAAACACAGCCGTGCCTCTCCTGCAGCATGAGGGGCCTTCTCAAGCCCTCCCCCAGCTCACCTCTCCCAGGCCTGTCTCCCCCCGTCCTCACTTTATCTTTCAGCCAGGTGCACCCTCTGAGAAGCCTTCCTCCACCTGAGATGCCCTTCCCGTGTCCGAATCGCCTCAGTCCCTCAGTCCCGCTCTCAGCTGACTTTTCGCCCTCTCTTCTGATTGGACTCCTTCTCTCCTCTCTGTCCCCACAGCGCGTTACTGGAATCTGTTTTCTGGTACTTAAGCAGTCTCTGCTGAGGAATGTAGCATTTATATTCCTGTCTTACTTGCCCATCAAGTATGTGTTTTTCTTGCGATCAAGGACAGTGTATCCCTCTTGACACCTAGCACGAGGCCTTGGGCGTAGGAGGCACTCGTGTGTTCAATGAATGGATGTACATTAATCACAGTAAACCCCTAGAGGATCATTCCGTTCTGACCATGTTTAGAAAGGGAAGGCTCTAAGGAGTTTAGTGTCACACCCTCTCCGGCCGAAGTCTCCCGGTGGCTGTCTTGTACTCCATGTGGTAGAGAGTGGACACGTGCGGCTCCAGCTTTTTGAGCTGTTGGCTGAACATACCACCATGTTCTTCCTTACCATCCTGGTGTGAATCCCCTGGTGAGCATTTAAAGAGCTACACAGGCAGTTTATGTCCTTCTCCATGTCACATACTTTCTTTCCTGCTTAACGTTCGACATCAGAAGTCACAAAGGATCCGTATCCGCTTTTAGTCTGTTTTGTCTTAGCAGCTCCTCTTTAGTGATACATTTGGTGAGTGAAGGGACACGGGATCCATTCGATTAATATTTATTGAACATCTACTATGTGCTAAGCACTGTGCAGAGGATATAACTGAATGGGCAGACATGGTTACTGACGTTGTGGAGTTTATAAGTCTAGTAAAAACTGATACTAAGAAAACAAAACCCACAGAATTATAAGTTGTGATAAATGCCTTAGAAAAAACCAAGCTTCCCTAGGATAGAACATAACTGGAGAGACTAATTTAGATGGGGGCCAGAAAGGGCCTCTGGAGTGCTAACATTCAGCTGCCACGTGAAGGATGGGGAGCCTGGGGCCTTTCAGGAGGACGGAGGAGGACACGCAGAGCGTGGGTCCCCCGTGCAGAGCAGGGGAGGGCGGAGGTGGTGGGGGAGGTGAGGGGATCTGCGTCCTTCACCGTGGAGTGTGTTCTCCCTGGAGAGAGGCTTAGATTTTATTTCCACGCAGGGAAGGATCACTGAAGCTTTTCAAGCAGGAGGGTGGTAGGATCTGATTTTCATTTTAAACAGATTTCTTGGCTCTGGGGAAGAAAGGTGTAAAAGTGCAAGTAAGATGCTTCGTAGAAGTCCAGGCAGGAGAGGAGAAGAGCCTGGGCAGGGAGGGAGCGGCAGGGACAGCAGGAGGTGCTCGGACTCAAGGGACGAGGTGGTGGAGGAGGAGCCGGGTGCGCTGGGGAGCCACTGACCACGGGAGGGGGTGGGCGGGGAGGGCTGGGCTCGTGCAGGTAAGACACTCATGCCACGTGGCCGTCGAAGACGTGTAATAGTTCCAATTTAAGGCAGAAATACTTCCTCCAGAGTGTTTTATTCATGCCTCATGGAATATTACATGCTTGAATTGTTATTTCACTGTAGTTTTTGAATTTGTTGATGAAATTTTAATTAACTTATTTTTTCATGTGCCTTTGCTAAAATAGGTACAGATACCTGCCTCTGGCATCAGTTATAAAGAGACTGATCACTGGGTGCCAGCTAGGTCATTTCCTAGTTTTGAGTCATGGACAAGTTCATCTCCCCAAATCTGAGTTCTCAATTGTAAGCAGGTCTTAGACTGGTGGTTACCAAGGAGTAGGGGTGGGTGTTAGCAGATGCAGACTAGGAGACATAGGAAAGAAACCATCATGAAACAGAATATGAAAGAGAATGTTATGTACATGTATAACTGAATCACTTTGCTGTATAGCAGTAATTAACACAGCATTGTTTAAAAAAACAAGGTAAATCCAAAAAAGAAATATAATGGATCTTTGAATTAATAAATTGCTTTATTTTATTTATGGCAGGTGCTAAATAAAGTTTTCTTAAGATAGACTTAAAAACCAAGTTAGTGTGTGTGTACATATATGTTTTAATTAGATACATATGCACTTACATGTACAGGTTTTTTTTTTTTTTTTTTTACCTCGAGTGTATAAGTGTATAAGTAATCTTTTTTTAGCAGCTGCTAGTTTCTTTATCTACTAAAACATTTAGCAACTCTTAATTAAAATATTTTTTATTATTATTTGATTATTTTGATTATTAATTTTGGAAGGCACTTCTCAACATCAGAAAATAATGGACTTGAGTTCATAAGTAACATATAAGGTATTACTTTACAAGTCTAATTAAAGTCTCTTTTACCGAGTAAGTATTATAAAGCAAATAAAGACCCAATAAAATTAGTCAAGAAACCCAAATTTATGGCACATTTTATAAATATGTGATTTTATATAAGAAATGTGGACATGAATTAACTAGATCATGCAAAGTACATACTGGAATGTTCATAATAAGGATATAATCTCCATGTACTTTTAAAAGAAAACATTGTAAATGTGTATTTGTATTTTTGATAAGATGATAAAAATGTTAGAGCACTCAGCCACTCCCTCTCTCCAGTTTGCCCCTTAGGAATTCCTGCGCTATTATTTTCTACTTTATGAAGGGACAAAATTGAGTCATTTAATCTTTATCGTTTTGAACACTAAAACTTGCAGTCTACAAACAGTAAGCCAAGTATAATGACACTTACACCTTGTCATGTGGGTTAAATTTTTTGAGATTGTAAATAGGCCTTTTAAAACCCACTAGAACAATCATGCTTTTTTTTTTTCTATAATGTGCTATTTATTGATTTACAATGAAGATAAAGGCTTCAGTGTTATTCCTCTCCATTGCTTAATCAGGGAACAAATGGGCCTGTGGAACGTTCTTCTTTCAGGAGCAGTTGTGTGTTCGTCCACCAGAGGCGTCCCTGCTGCCCATGGACTGTTATGTGAAAAGAGCACAGTCAGAGGAACTCAGATCTTTCTGGAAACACTAAGCCCCTGGGCCTCTCACTCAACCCCACTTCGGTTATCTTTCCTCAAGGGCTTTGAGAGGCTTATTCTCAAAGAGGACAATAGCCTTTCCTGAAGTCTGAGTGTTTAACTTTGTAAATACTATACAAACTGAGGTTTTTATTGCGGGTTTGAGGATAACAGAGATAATTTTGTTCGGTATTATACTTTGTTTTAACGATTTACTAAAAATAGTGAAGTATGAATAAAATGTCAACACAGAGTTCCTGGAGGCTGAGAACGGTGCTCTGTCCTGTCAGGAGCGAGGTACGAGTTGACTCACATCCGTGAGCTGTCTGTTGCTAACAACACGTCTGGGTTAGCACGGTGCTGCCTTCACTGCAGTGCTATGGGAGGATTTGCAGCTGGCACCCAAGGAAAACTGACTGTCTTCTTTCTGAACTGAAACCCAAATGTCCATGAGTGTTATCAAAGTTTAAACAAAAGCCTTGCACGACAGAGTTCTGCTTGAATCGAATAAAGGATGGCTGTGTCTTTGCTAATAACCTGCACTCAAGGAGGGGAGGAGAGCTGTGTGAAGGAATCCTTTCTTTGAAATCAGCCATGCAGGCGGGTTTCTCGGTGTCCACCCGGTGGAAATGCACGGGCCGAGAGGAGCCTGGCTCTCCGGTTTCCAGCTTTGGCAGGTGAGCACAGAAGGAAATTGGAGAGAAGAGGGAGAATCCTGAATTGGGCACCTTCGTGGGTGACTTGCTTCCCTTCTTTTTAGCATGATTGACAGTGTTCTTACCTGGAGAATCCCAGGGATGGGGGAGCCTGGTGGGCTGCCGTCTGTGGGGTCGCACAGAGTCGGACACAACTGAAATGACTTAGCAGCAGCAGCATGGTTGACAAATCCTGGTGGAAAGAGTGACTGAGATTTTTTTTTTTTTTTTTTTTTTGCTCATTAAGACCAGGCACTGCTCAAATTCTTTGAGAGTTGAAAATAGGAGAATGACATATGTACTTTAGGTAATTAGGTGAAAAAGTCTTTTCTTTAGAAATAGTATTCTTACATTACTTCATAACCCTGCAGATGGCTCTTTTAATAATATCATGCTCTTTTTAAAAAAACGTAAAACATGAGATTGTATTATTCCCCAGAGATGTAACCTGAATAGACTGTTTATTGTCCTTCATTATACAAGCAGCATAGAGTTTTAAATTCTAAATCAGTTTATGCCAAAGCAGCTACATTTTATCATTCTAATATGTTGGTTTGTTCTGGTACATTATAGACCCACACTTAAATAAAATTTCTTCATTTCCAGCTTTATTTTCATACAGTTCTTTTTTTCCCTTTATGTTGTGATCACATTTATCTGTGACTTTATCATATTCTGGTAGTGTGAATTTAAGGAAACATACAATAATTAAAGAATTGGATCAAAGCCTCTTTGAAGATTAGAGCCAGCAAAGGATTATAATGACCTTGAATCTGAAATAAAACATGTGACTCTTTGATTTTGTGTATCGCTATTAAGATTTATTTTCTTCTAGGTTATCTGTCTCAGAATTGCCCTTATTAAAGCTTAAGATTTGGCAATTTCCAGGAGTTCCTTTTTATCCTATCTGGTTTTTGTCTACGTTTGCTTTGACTTTTACAACCTTAATCCTAAACTTATAAATCGAGGTTCCCATCTAGGACACAAGAGCAGGCTTCAGAGCAGCCTCCCGTGCAGGCCGGGAGACGATGTAGAGCACTGGTCACCAGACCTCCATGGCAGCCAGCACAAACGTGCCTGATGAAGGACACAGATTTCTCAGTTTTAAAAGCACTGGACTCCCTTTGTTATATGCCCGCTTTGTACTATGACTTTAAATGATGAAAATGTACAGCGGAGAAAGCAGTTCTTTCTTTCTCTTTTGGAGGGGAGGGTGGGGGGCATGGCTTACGGTTTGTAGGATCTTAGTTCCCCGATCAGGCGTGCAAATGGGCCCTCAGCAGTGACCTGAGGGTCCTGACCACTGGACTGCAGAGAAGTCCCGAGAAGCATCTCTCAAGTGTCCAGGAGAAAGCCAGAAGCTGTCCCTGATATTAGAGGAGGTCACATGTCACACATGTCCCGAGTAGGGAAGGGGAAGGCACGTAACGTGTGTGTATGGTCACCTCCAAATTTCTCCATATCCAGGATGGAGGGAAGGGGCGTGGCTCCCGTGCCACCATCTGGCTGCATCTCTGTTTGGACTTAGGCTGTATGGACGTGCTCAGAACTGGGGTTGGGGGGGCGGGTGTTGGGGACCCAGGGCATGAGCCATGGAGTCAGAGCTGTCCCTCCACGTGAACACCTATTTCTTGCTTTGAAAACTAATTCCACTGCCTGAATATTTTGCAGTTCAGCTAAATACTCAAAAGGAAAATCTGATGAAGTTGGTAAGAGAGCTGTGTTGTTTCTCTTTGGTCAG
Seq C2 exon
GTCCTGAAGAAAGTCTCCAAATACATTCAAGAGCAGAATGAGAAGATCTATGCCCCACAAGGCCTCCTCCTGACAGATCCCATCGAGAGAGGGCTGCGAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027626:ENSBTAT00000039788:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102564=Erf4=FE(43.5=100)
A:
NA
C2:
PF102564=Erf4=FE(28.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]